YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RH40_ARATH

General Information:
Name(s) found: RH40_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
SHOW ALL
  • DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1088 amino acids

    Gene Ontology:
    Cellular Component: vacuole [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA][ISS]
    protein binding [IEA]
    ATP-dependent helicase activity [IEA][ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA  60
   61 TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP QQFPSQHVRP QMMQQHPAQQ 120
  121 MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ 180
  181 QHYMGFRPHM QTQGLQNSHQ TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP 240
  241 HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP 300
  301 RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP 360
  361 KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP HFVTSPDVPH LSPVEIYRKQ 420
  421 HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK 480
  481 TGSGKTLGYL IPAFILLRHC RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC 540
  541 LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP 600
  601 QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV 660
  661 VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV GRHFGAVVIH GDKTQGERDW 720
  721 VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF 780
  781 TFFTEQDWKY APDLIKVLEG ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG 840
  841 GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR 900
  901 GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD 960
  961 LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR HSRDRGGHNR SRSYSRSPSP1020
 1021 VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV1080
 1081 RPVVDEEP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..208] MSA 2.183997 View MSA. No confident structure predictions are available.
    2 View Details [209..390] deduced N/A No confident structure predictions are available.
    3 View Details [391..820] PSI-BLAST 102.0 No description for 2i4iA was found.
    4 View Details [821..909] PSI-BLAST 20.69897 Nucleotide excision repair enzyme UvrB
    5 View Details [910..1088] MSA 2.418979 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle