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Protein Overview: gi|42562835, gi|...

General Information:
Name(s) found: gi|42562835 [NCBI NR]
gi|25404278 [NCBI NR]
gi|2462753 [NCBI NR]
Description(s) found:
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  • gi|42562835|ref|NP_564758.2| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
  • pir||B96631 probable polygalacturonase F8A5.12 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2462753|gb|AAB71972.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • (O22699) Putative polygalacturonase [athaliana3702.FASTAC.txt]
  • putative polygalacturonase [Arabidopsis thaliana]gi|25404278|pir||B96631 probable polygalacturonase F8A5.12 [imported] - Arabidopsis thalianagi|42562835|ref|NP_564758.2| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Polygalacturonase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | polygalacturonase, putative / pectinase, putative | chr1:22318091-22320532 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr1:22314426-22316867 REVERSE LENGTH=540 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Pectin lyase-like protein OS=Arabidopsis thaliana GN=F8A5.12 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 540 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH  60
   61 ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP PPPHVQPPPT PLPLQPVEDS 120
  121 QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN 180
  181 IVFQLEGMIV APTDTESWGG GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI 240
  241 DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH 300
  301 LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY 360
  361 VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM TGVRIKTWQG GIGSVKGILF 420
  421 SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC 480
  481 IDVQLSGIEL KPVQLQYHMY DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL 540
  541

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..540] PSI-BLAST 64.522879 No description for 2uveA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle