YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|42562835, gi|...
Organism: Arabidopsis thaliana
Length: 540 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42562835, gi|....

Description E-value Query
Range
Subject
Range
gi|25402611, gi|... - gi|6573750|gb|AAF17670.1|AC009398_19 F20B24.8 [Arabidopsis thaliana], pir||H86239 protein F20B24.8 [...
374.0 [0..1] [539..1]

Back

Predicted Domain #1
Region A:
Residues: [1-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH  60
   61 ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP PPPHVQPPPT PLPLQPVEDS 120
  121 QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN 180
  181 IVFQLEGMIV APTDTESWGG GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI 240
  241 DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH 300
  301 LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY 360
  361 VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM TGVRIKTWQG GIGSVKGILF 420
  421 SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC 480
  481 IDVQLSGIEL KPVQLQYHMY DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL 540
  541 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.522879
Match: 2uveA
Description: No description for 2uveA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle