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Protein Overview: PUB29_ARATH

General Information:
Name(s) found: PUB29_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9293894|dbj|BAB01797.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|75273932|sp|Q9LSA6.1|PUB29_ARATH RecName: Full=U-box domain-containing protein 29; AltName: Full=Plant U-box protein 29 [NCBI NR]
  • gi|15230166|ref|NP_188501.1| PUB29 (PLANT U-BOX 29); ubiquitin-protein ligase [Arabidopsis thaliana] [NCBI NR]
  • U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1 [Swiss-Prot]
  • (Q9LSA6) Genomic DNA, chromosome 3, P1 clone: MVE11 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15230166|ref|NP_188501.1| U-box domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 U-box domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | U-box domain-containing protein | chr3:6434240-6435487 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PUB29, ATPUB29 | plant U-box 29 | chr3:6434234-6435481 REVERSE LENGTH=415 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 415 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: response to chitin [IEP]
    protein ubiquitination [IDA]
    Molecular Function: ubiquitin-protein ligase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL  60
   61 KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE VPTKEEVNVL LERLMSLENL 120
  121 MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN 180
  181 LMLANDGGDC LTAILLAIQR GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI 240
  241 SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK 300
  301 LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE 360
  361 ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS ALAAYETKTT HIMPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] PSI-BLAST 12.69897 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    2 View Details [141..415] PSI-BLAST 33.30103 Crystal Structure of Yeast Karyopherin (Importin) alpha in complex with a Nup2p N-terminal fragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle