| Protein: | PUB29_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 415 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB29_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
169.0 | [0..1] | [415..1] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL 60
61 KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE VPTKEEVNVL LERLMSLENL 120
121 MKIVRFVKDS DSNREFLSKK
|
| Detection Method: |  |
| Confidence: | 12.69897 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [141-415] |
1 11 21 31 41 51
| | | | | |
1 MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR 60
61 GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT 120
121 ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK LLETLSSKRE GRLEICGDDN 180
181 GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC 240
241 SAMVRQMAKD LIKVLKFNSS ALAAYETKTT HIMPF
|
| Detection Method: | |
| Confidence: | 33.30103 |
| Match: | 1un0A |
| Description: | Crystal Structure of Yeast Karyopherin (Importin) alpha in complex with a Nup2p N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
