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Protein Overview: CSP2_ARATH

General Information:
Name(s) found: CSP2_ARATH [Swiss-Prot]
Description(s) found:
Found 21 descriptions.
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  • Cold shock protein 2 OS=Arabidopsis thaliana GN=CSP2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 203 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasm [IDA]
    nucleolus [IDA]
    plasma membrane [IDA]
    Biological Process: response to cold [IEP]
    stamen development [IMP]
    [NOT]DNA duplex unwinding [IDA]
    seed development [IMP]
    vegetative to reproductive phase transition of meristem [IMP]
    Molecular Function: nucleic acid binding [ISS]
    double-stranded DNA binding [IDA]
    mRNA binding [IDA]
    single-stranded DNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDNGGGER RKGSVKWFDT QKGFGFITPD DGGDDLFVHQ SSIRSEGFRS LAAEEAVEFE  60
   61 VEIDNNNRPK AIDVSGPDGA PVQGNSGGGS SGGRGGFGGG RGGGRGSGGG YGGGGGGYGG 120
  121 RGGGGRGGSD CYKCGEPGHM ARDCSEGGGG YGGGGGGYGG GGGYGGGGGG YGGGGRGGGG 180
  181 GGGSCYSCGE SGHFARDCTS GGR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] PSI-BLAST 16.221849 CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI
    2 View Details [82..203] FFAS03 2.56 No description for 2ihxA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.141433535514844 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle