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View Structure Prediction Details

Protein: CSP2_ARATH
Organism: Arabidopsis thaliana
Length: 203 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|25166861 - gi|25166861|gb|AAN73646.1|AF484501_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
140.0 [0..51] [203..301]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDNGGGER RKGSVKWFDT QKGFGFITPD DGGDDLFVHQ SSIRSEGFRS LAAEEAVEFE  60
   61 VEIDNNNRPK AIDVSGPDGA P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.221849
Match: 1mjcA
Description: CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.141433535514844 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [82-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQGNSGGGSS GGRGGFGGGR GGGRGSGGGY GGGGGGYGGR GGGGRGGSDC YKCGEPGHMA  60
   61 RDCSEGGGGY GGGGGGYGGG GGYGGGGGGY GGGGRGGGGG GGSCYSCGES GHFARDCTSG 120
  121 GR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.56
Match: 2ihxA
Description: No description for 2ihxA was found.

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