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Protein Overview: gi|25310685, gi|...

General Information:
Name(s) found: gi|9802547 [NCBI NR]
gi|25310685 [NCBI NR]
gi|18377444 [NCBI NR]
gi|15223491 [NCBI NR]
gi|14596203 [NCBI NR]
Description(s) found:
Found 15 descriptions.
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  • gi|9802547|gb|AAF99749.1|AC004557_28 F17L21.10 [Arabidopsis thaliana] [NCBI NR]
  • pir||H86398 protein F17L21.10 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|18377444|gb|AAL66888.1| similar to nuclear transport factor 2 [Arabidopsis thaliana] [NCBI NR]
  • gi|15223491|ref|NP_174051.1| NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter [Arabidopsis thaliana] [NCBI NR]
  • gi|14596203|gb|AAK68829.1| similar to nuclear transport factor 2 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 122 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDA]
    nucleus [IDA][ISS]
    cytoplasm [IDA]
    intracellular [ISS]
    Biological Process: nucleocytoplasmic transport [IGI]
    protein import into nucleus [IGI][IMP][ISS]
    Molecular Function: protein transporter activity [ISS]
    Ran GTPase binding [IGI][IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPDAVAKAF VEHYYSTFDA NRPGLVSLYQ EGSMLTFEGQ KIQGSQNIVA KLTGLPFQQC  60
   61 KHNITTVDCQ PSGPAGGMLV FVSGNLQLAG EQHALKFSQM FHLISNQGNY YVFNDIFRLN 120
  121 YA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] PSI-BLAST 39.69897 Nuclear transport factor-2 (NTF2)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein transporter activity
    		•  3.2858716221712 bayes_pls_golite062009
  • nucleocytoplasmic transporter activity
    		•  2.57260151088345 bayes_pls_golite062009
  • binding
    		•  2.32562999055027 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  2.22367856601071 bayes_pls_golite062009
  • transporter activity
    		•  1.80701285041353 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.33804818542017 bayes_pls_golite062009
  • structural constituent of nuclear pore
    		•  1.30758304562723 bayes_pls_golite062009
  • protein binding
    		•  1.24260899146543 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.22102896992563 bayes_pls_golite062009
  • Ran GTPase binding
    		•  1.18290069522408 bayes_pls_golite062009
  • RNA binding
    		•  1.05240446104847 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.890150150408175 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven protein transmembrane transporter activity
    		•  0.79772386064313 bayes_pls_golite062009
  • macromolecule transmembrane transporter activity
    		•  0.79772386064313 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.688410645367506 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.446562877324676 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.439519001457896 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.430285640125175 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle