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Protein Overview: gi|18400416, gi|...

General Information:
Name(s) found: gi|20197296 [NCBI NR]
gi|18400416 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|20197296|gb|AAM15014.1| predicted protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18400416|ref|NP_565559.1| chloroplast nucleoid DNA-binding protein-related [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 458 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: proteolysis [IEA]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECSFQTSLL LFITVSYFVV TESIKPNRMA MKLIHRESVA RLNPNARVPI TPEDHIKHLT  60
   61 DISSARFKYL QNSIDKELGS SNFQVDVEQA IKTSLFLVNF SVGQPPVPQL TIMDTGSSLL 120
  121 WIQCQPCKHC SSDHMIHPVF NPALSSTFVE CSCDDRFCRY APNGHCGSSN KCVYEQVYIS 180
  181 GTGSKGVLAK ERLTFTTPNG NTVVTQPIAF GCGYENGEQL ESHFTGILGL GAKPTSLAVQ 240
  241 LGSKFSYCIG DLANKNYGYN QLVLGEDADI LGDPTPIEFE TENSIYYMNL EGISVGDTQL 300
  301 NIEPVVFKRR GPRTGVILDS GTLYTWLADI AYRELYNEIK SILDPKLERF WFRDFLCYHG 360
  361 RVSEELIGFP VVTFHFAGGA ELAMEATSMF YPLSEPNTFN VFCMSVKPTK EHGGEYKEFT 420
  421 AIGLMAQQYY NIGYDLKEKN IYLQRIDCVQ LDDYSPSK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..458] PSI-BLAST 68.39794 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle