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Protein Overview: PUB12_ARATH

General Information:
Name(s) found: PUB12_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 654 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: response to chitin [IEP]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    structural constituent of ribosome [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSEKHKLA QTLIDSINEI ASISDSVTPM KKHCANLSRR LSLLLPMLEE IRDNQESSSE  60
   61 VVNALLSVKQ SLLHAKDLLS FVSHVSKIYL VLERDQVMVK FQKVTSLLEQ ALSIIPYENL 120
  121 EISDELKEQV ELVLVQLRRS LGKRGGDVYD DELYKDVLSL YSGRGSVMES DMVRRVAEKL 180
  181 QLMTITDLTQ ESLALLDMVS SSGGDDPGES FEKMSMVLKK IKDFVQTYNP NLDDAPLRLK 240
  241 SSLPKSRDDD RDMLIPPEEF RCPISLELMT DPVIVSSGQT YERECIKKWL EGGHLTCPKT 300
  301 QETLTSDIMT PNYVLRSLIA QWCESNGIEP PKRPNISQPS SKASSSSSAP DDEHNKIEEL 360
  361 LLKLTSQQPE DRRSAAGEIR LLAKQNNHNR VAIAASGAIP LLVNLLTISN DSRTQEHAVT 420
  421 SILNLSICQE NKGKIVYSSG AVPGIVHVLQ KGSMEARENA AATLFSLSVI DENKVTIGAA 480
  481 GAIPPLVTLL SEGSQRGKKD AATALFNLCI FQGNKGKAVR AGLVPVLMRL LTEPESGMVD 540
  541 ESLSILAILS SHPDGKSEVG AADAVPVLVD FIRSGSPRNK ENSAAVLVHL CSWNQQHLIE 600
  601 AQKLGIMDLL IEMAENGTDR GKRKAAQLLN RFSRFNDQQK QHSGLGLEDQ ISLI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] MSA 3.112995 View MSA. Confident ab initio structure predictions are available.
    2 View Details [144..247] MSA 1.185996 View MSA. No confident structure predictions are available.
    3 View Details [248..336] PSI-BLAST 9.221849 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    4 View Details [337..654] PSI-BLAST 33.522879 beta-Catenin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle