| Protein: | PUB12_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 654 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB12_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
357.0 | [0..1] | [654..1] |
|
|
279.0 | [0..9] | [634..54] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MAKSEKHKLA QTLIDSINEI ASISDSVTPM KKHCANLSRR LSLLLPMLEE IRDNQESSSE 60
61 VVNALLSVKQ SLLHAKDLLS FVSHVSKIYL VLERDQVMVK FQKVTSLLEQ ALSIIPYENL 120
121 EISDELKEQV ELVLVQLRRS LGK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.990 | N/A | N/A | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
|
Region A: Residues: [144-247] |
1 11 21 31 41 51
| | | | | |
1 RGGDVYDDEL YKDVLSLYSG RGSVMESDMV RRVAEKLQLM TITDLTQESL ALLDMVSSSG 60
61 GDDPGESFEK MSMVLKKIKD FVQTYNPNLD DAPLRLKSSL PKSR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [248-336] |
1 11 21 31 41 51
| | | | | |
1 DDDRDMLIPP EEFRCPISLE LMTDPVIVSS GQTYERECIK KWLEGGHLTC PKTQETLTSD 60
61 IMTPNYVLRS LIAQWCESNG IEPPKRPNI
|
| Detection Method: | |
| Confidence: | 9.221849 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [337-654] |
1 11 21 31 41 51
| | | | | |
1 SQPSSKASSS SSAPDDEHNK IEELLLKLTS QQPEDRRSAA GEIRLLAKQN NHNRVAIAAS 60
61 GAIPLLVNLL TISNDSRTQE HAVTSILNLS ICQENKGKIV YSSGAVPGIV HVLQKGSMEA 120
121 RENAAATLFS LSVIDENKVT IGAAGAIPPL VTLLSEGSQR GKKDAATALF NLCIFQGNKG 180
181 KAVRAGLVPV LMRLLTEPES GMVDESLSIL AILSSHPDGK SEVGAADAVP VLVDFIRSGS 240
241 PRNKENSAAV LVHLCSWNQQ HLIEAQKLGI MDLLIEMAEN GTDRGKRKAA QLLNRFSRFN 300
301 DQQKQHSGLG LEDQISLI
|
| Detection Method: | |
| Confidence: | 33.522879 |
| Match: | 1jpwA |
| Description: | beta-Catenin |
Matching Structure (courtesy of the PDB): |
|
