YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: ORTH1_ARATH

General Information:
Name(s) found: ORTH1_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana GN=ORTH1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 617 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: vegetative to reproductive phase transition of meristem [IMP]
    [NOT]DNA methylation on cytosine [IMP]
    protein ubiquitination [IDA]
    Molecular Function: ubiquitin-protein ligase activity [IDA]
    zinc ion binding [ISS]
    protein binding [ISS]
    methyl-CpNpG binding [IDA]
    methyl-CpNpN binding [IDA]
    methyl-CpG binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIETQLPCD GDGVCMRCQV NPPSEETLTC GTCVTPWHVP CLLPESLASS TGEWECPDCS  60
   61 GVVVPSAAPG TGNARPESSG SVLVAAIRAI QADETLTEAE KAKKRQKLMS GGGDDGVDEE 120
  121 EKKKLEIFCS ICIQLPERPI TTPCGHNFCL KCFEKWAVGQ GKLTCMICRS KIPRHVAKNP 180
  181 RINLALVSAI RLANVTKCSV EATAAKVHHI IRNQDRPEKA FTTERAVKTG KANAASGKFF 240
  241 VTIPRDHFGP IPAENDVTRK QGVLVGESWE DRQECRQWGA HFPHIAGIAG QSAVGAQSVA 300
  301 LSGGYDDDED HGEWFLYTGS GGRDLSGNKR INKKQSSDQA FKNMNESLRL SCKMGYPVRV 360
  361 VRSWKEKRSA YAPAEGVRYD GVYRIEKCWS NVGVQGSFKV CRYLFVRCDN EPAPWTSDEH 420
  421 GDRPRPLPNV PELETAADLF VRKESPSWDF DEAEGRWKWM KSPPVSRMAL DPEERKKNKR 480
  481 AKNTMKARLL KEFSCQICRE VLSLPVTTPC AHNFCKACLE AKFAGITQLR ERSNGGRKLR 540
  541 AKKNIMTCPC CTTDLSEFLQ NPQVNREMME IIENFKKSEE EADASISEEE EEESEPPTKK 600
  601 IKMDNNSVGG SGTSLSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] FFAS03 3.08 No description for 2e6rA was found.
    2 View Details [90..250] PSI-BLAST 7.69897 No description for 2cklB was found.
    3 View Details [251..468] Pfam 74.187087 No description for PF02182.8 was found. No confident structure predictions are available.
    4 View Details [469..617] PSI-BLAST 18.09691 RAG1 DIMERIZATION DOMAIN

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle