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Protein Overview: gi|3377835, gi|7...

General Information:
Name(s) found: gi|7487392 [NCBI NR]
gi|7267167 [NCBI NR]
gi|3377835 [NCBI NR]
gi|15233392 [NCBI NR]
Description(s) found:
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  • pir||T01463 hypothetical protein T24H24.18 - Arabidopsis thaliana [NCBI NR]
  • gi|7267167|emb|CAB77879.1| putative RPP1-like disease resistance protein [Arabidopsis thaliana] [NCBI NR]
  • gi|3377835|gb|AAC28208.1| contains similarity to Arabidopsis thaliana downy mildew resistance protein RPP5 (GB:U97106) [NCBI NR]
  • gi|15233392|ref|NP_192320.1| Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (O81430) T24H24.18 protein (Putative RPP1-like disease resistance protein) [athaliana3702.FASTAC.txt]
  • putative RPP1-like disease resistance protein [Arabidopsis thaliana]gi|7487392|pir||T01463 hypothetical protein T24H24.18 - Arabidopsis thalianagi|3377835|gb|AAC28208.1| contains similarity to Arabidopsis thaliana downy mildew resistance protein RPP5 (G [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Toll-Interleukin-Resistance (TIR) domain-containing protein, domain signature TIR exists, suggestive of a disease resistance protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing protein | chr4:1972589-1974012 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative RPP1-like disease resistance protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transmembrane receptor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • contains similarity to Arabidopsis thaliana downy mildew resistance protein RPP5 (GB:U97106) [nr-271106-contam.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain family protein | chr4:1972591-1974014 FORWARD LENGTH=239 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative RPP1-like disease resistance protein OS=Arabidopsis thaliana GN=T24H24.18 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 239 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    defense response [ISS]
    Molecular Function: transmembrane receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDKHDTDLT FKRIAAQFLT LSLIRFSKKS HSSLHYGLQF WVLYVFPSFS VEDIRQTFLS  60
   61 HFLKDLDRKL IIAFKDNEIE RSQSLNPDLK RPIRDSRIAI VIFSKNYASS SWCLNELLEI 120
  121 VRCKEDSNRL VVIPVFYGLD PSHVRKQIGN FGKIFKKTCQ NRTEDEINLR RRALIDVANT 180
  181 LGYHSTICKA NMTKEITNDV LVKLNLTPSN DIEDFEVRMV RIWGFYLVVS LVISKVVSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] PSI-BLAST 25.522879 Toll-like receptor 1, TLR1
    2 View Details [182..239] FFAS03 1.11 Plasmid maintenance system epsilon/zeta, toxin zeta subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.261666574457319 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.60

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle