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Protein Overview: RFC1_ARATH

General Information:
Name(s) found: RFC1_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Replication factor C subunit 1 OS=Arabidopsis thaliana GN=RFC1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 956 amino acids

    Gene Ontology:
    Cellular Component: DNA replication factor C complex [IEA]
    intracellular [IEA]
    Biological Process: DNA replication [IEA]
    Molecular Function: nucleotide binding [IEA]
    DNA binding [IEA]
    ATP binding [IEA][ISS]
    DNA clamp loader activity [IEA]
    nucleoside-triphosphatase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIRKWFMK AHEKGNGSAP KSTSSKAGPV KNAAETAPIK SEQASEDLET ADRRKTSKYF  60
   61 GKDKTKVKDE KEVEAIPAKR KLKTESDDLV KPRPRKVTKV VDDDDDDFDV PISRKTRDTT 120
  121 PSKKLKSGSG RGIASKTVDN DDDDDGEDKE TPLKSAGRGR GGRAAPGAST GGRGRGGGRG 180
  181 GFMNFGERKD PPHKGEKEVP EGTPDCLAGL TFVISGTLDS LEREEAEDLI KRHGGRITGS 240
  241 VSKKTTYLLC DEDIGGRKSE KAKELGTKFL TEDGLFDIIR SSKPVKKSLP ERSNKGTEKI 300
  301 CAPPKTSPQK EETRGKPLAK SSPKKVPPAK GKNKIIETSL PWTEKYRPKV PNEIVGNQSL 360
  361 VTQLHNWLSH WHDQFGGTGS KGKGKKLNDA GSKKAVLLSG TPGIGKTTSA KLVSQMLGFQ 420
  421 AVEVNASDSR GKANSNIAKG IGGSNANSVK ELVNNEAMAA NFDRSKHPKT VLIMDEVDGM 480
  481 SAGDRGGVAD LIASIKISKI PIICICNDRY SQKLKSLVNY CLPLNYRKPT KQQMAKRLMH 540
  541 IAKAEGLEIN EIALEELAER VNGDIRLAVN QLQYMSLSMS VIKYDDIRQR LLSSAKDEDI 600
  601 SPFTAVDKLF GYNGGKLRMD ERIDLSMSDP DLVPLLIQEN YLNYRPSGKD EAKRMDLLAR 660
  661 AAESIADGDI INVQIRRYRQ WQLSQSCCVA SSILPASLLH GSREVLEQGE RNFNRFGGWL 720
  721 GKNSTAGKNR RLMEDLHVHV LASRESSAGR ETLRVDYLPL LLSRLTSPLQ TLPKDEAVSE 780
  781 VVDFMNSYSI SQEDFDTILE LGKFKGRENP MEGVPPPVKA ALTKKYNEMN KTRMVRVADM 840
  841 VQLPGVKKAP KKRIAAMLEP TVDSLRDEDG EPLADNEEGN GSDAEEDSEE ATDGEKLESN 900
  901 LKNLNARGIQ VELDLKGAGS SGSRKAAGKG RGRGKAADTS AEKKATGRGS GAKRKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] PSI-BLAST 56.045757 No description for 2owoA was found.
    2 View Details [79..266] PSI-BLAST 62.69897 VCP/p97
    3 View Details [267..334] PSI-BLAST 24.154902 No description for 2zamA was found.
    4 View Details [335..850] PSI-BLAST 52.221849 Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA)
    5 View Details [851..956] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle