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Protein Overview: CYP38_ARATH

General Information:
Name(s) found: CYP38_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75266250|sp|Q9SSA5.1|CYP38_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic; Short=PPIase CYP38; Short=Rotamase CYP38; AltName: Full=Thylakoid lumen PPIase; Flags: Precursor [NCBI NR]
  • gi|6016707|gb|AAF01533.1|AC009325_3 putative thylakoid lumen rotamase [Arabidopsis thaliana] [NCBI NR]
  • gi|45680876|gb|AAS75307.1| multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] [NCBI NR]
  • gi|21593368|gb|AAM65317.1| putative thylakoid lumen rotamase [Arabidopsis thaliana] [NCBI NR]
  • gi|21360549|gb|AAM47471.1| AT3g01480/F4P13_3 [Arabidopsis thaliana] [NCBI NR]
  • gi|15232123|ref|NP_186797.1| CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] [NCBI NR]
  • gi|14532438|gb|AAK63947.1| AT3g01480/F4P13_3 [Arabidopsis thaliana] [NCBI NR]
  • Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1 [Swiss-Prot]
  • (Q9SSA5) Putative thylakoid lumen rotamase (EC 5.2.1.8) (AT3g01480/F4P13_3) (Peptidyl-prolyl cis-trans isomerase) (PPIase) [athaliana3702.FASTAC.txt]
  • putative thylakoid lumen rotamase [Arabidopsis thaliana]gi|21593368|gb|AAM65317.1| putative thylakoid lumen rotamase [Arabidopsis thaliana]gi|21360549|gb|AAM47471.1| AT3g01480/F4P13_3 [Arabidopsis thaliana]gi|45680876|gb|AAS75307.1| multidomain cycloph [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Peptidyl-prolyl cis-trans isomerase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CYP38 | CYP38 (CYCLOPHILIN 38); peptidyl-prolyl cis-trans isomerase | chr3:188576-190681 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative thylakoid lumen rotamase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g01480/F4P13_3 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 437 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    thylakoid lumen [IDA]
    chloroplast thylakoid lumen [IDA][ISS]
    thylakoid [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: protein folding [ISS]
    defense response to bacterium [IEP]
    Molecular Function: peptidyl-prolyl cis-trans isomerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAFASLPT FSVVNSSRFP RRRIGFSCSK KPLEVRCSSG NTRYTKQRGA FTSLKECAIS  60
   61 LALSVGLMVS VPSIALPPNA HAVANPVIPD VSVLISGPPI KDPEALLRYA LPIDNKAIRE 120
  121 VQKPLEDITD SLKIAGVKAL DSVERNVRQA SRTLQQGKSI IVAGFAESKK DHGNEMIEKL 180
  181 EAGMQDMLKI VEDRKRDAVA PKQKEILKYV GGIEEDMVDG FPYEVPEEYR NMPLLKGRAS 240
  241 VDMKVKIKDN PNIEDCVFRI VLDGYNAPVT AGNFVDLVER HFYDGMEIQR SDGFVVQTGD 300
  301 PEGPAEGFID PSTEKTRTVP LEIMVTGEKT PFYGSTLEEL GLYKAQVVIP FNAFGTMAMA 360
  361 REEFENDSGS SQVFWLLKES ELTPSNSNIL DGRYAVFGYV TDNEDFLADL KVGDVIESIQ 420
  421 VVSGLENLAN PSYKIAG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] deduced N/A No confident structure predictions are available.
    2 View Details [89..187] PSI-BLAST 7.69897 Solution Structure of the RNA recognition motif in Peptidyl-prolyl cis-trans isomerase E
    3 View Details [188..437] PSI-BLAST 38.0 Crystal Structure of cyclophilin from Plasmodium yoelii.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3
    Term Confidence Notes
  • catalytic activity
    		•  0.218596983141665 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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