YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|12597768, gi|...

General Information:
Name(s) found: gi|15219728 [NCBI NR]
gi|12597768 [NCBI NR]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • gi|15219728|ref|NP_176845.1| ATP dependent DNA ligase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12597768|gb|AAG60081.1|AC013288_15 DNA ligase I, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1417 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: DNA repair [IEA][ISS]
    DNA replication [IEA][ISS]
    DNA recombination [IEA][ISS]
    Molecular Function: ATP binding [IEA][ISS]
    DNA binding [IEA]
    DNA ligase (ATP) activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDSAGATI SGNFSNSDNS ETLNLNTTKL YSSAISSISP QFPSPKPTSS CPSIPNSKRI  60
   61 PNTNFIVDLF RLPHQSSSVA FFLSHFHSDH YSGLSSSWSK GIIYCSHKTA RLVAEILQVP 120
  121 SQFVFALPMN QMVKIDGSEV VLIEANHCPG AVQFLFKVKL ESSGFEKYVH TGDFRFCDEM 180
  181 RFDPFLNGFV GCDGVFLDTT YCNPKFVFPS QEESVGYVVS VIDKISEEKV LFLVATYVVG 240
  241 KEKILVEIAR RCKRKIVVDA RKMSMLSVLG CGEEGMFTED ENESDVHVVG WNVLGETWPY 300
  301 FRPNFVKMNE IMVEKGYDKV VGFVPTGWTY EVKRNKFAVR FKDSMEIHLV PYSEHSNYDE 360
  361 LREFIKFLKP KRVIPTVGVD IEKFDCKEVN KMQKHFSGLV DEMANKKDFL LGFYRQSYQK 420
  421 NEKSDVDVVS HSAEVYEEEE KNACEDGGEN VPSSRGPILH DTTPSSDSRL LIKLRDSLPA 480
  481 WVTEEQMLDL IKKHAGNPVD IVSNFYEYEA ELYKQASLPT PSLNNQAVLF DDDVTDLQPN 540
  541 PVKGICPDVQ AIQKGFDLPR KMNLTKGTIS PGKRGKSSGS KSNKKAKKDP KSKPVGPGQP 600
  601 TLFKFFNKVL DGGSNSVSVG SETEECNTDK KMVHIDASEA YKEVTDQFID IVNGSESLRD 660
  661 YAASIIDEAK GDISRALNIY YSKPREIPGD HAGERGLSSK TIQYPKCSEA CSSQEDKKAS 720
  721 ENSGHAVNIC VQTSAEESVD KNYVSLPPEK YQPKEHACWR EGQPAPYIHL VRTFASVESE 780
  781 KGKIKAMSML CNMFRSLFAL SPEDVLPAVY LCTNKIAADH ENIELNIGGS LISSALEEAC 840
  841 GISRSTVRDM YNSLGDLGDV AQLCRQTQKL LVPPPPLLVR DVFSTLRKIS VQTGTGSTRL 900
  901 KKNLIVKLMR SCREKEIKFL VRTLARNLRI GAMLRTVLPA LGRAIVMNSF WNDHNKELSE 960
  961 SCFREKLEGV SAAVVEAYNI LPSLDVVVPS LMDKDIEFST STLSMVPGIP IKPMLAKIAK1020
 1021 GVQEFFNLSQ EKAFTCEYKY DGQRAQIHKL LDGTVCIFSR NGDETTSRFP DLVDVIKQFS1080
 1081 CPAAETFMLD AEVVATDRIN GNKLMSFQEL STRERGSKDA LITTESIKVE VCVFVFDIMF1140
 1141 VNGEQLLALP LRERRRRLKE VFPETRPGYL EYAKEITVSA TVGAEEASLN NHDTLSRINA1200
 1201 FLEEAFQSSC EGIMVKSLDV NAGYCPTKRS DSWLKVKRDY VDGLGDTLDL VPIGAWYGNG1260
 1261 RKAGWYSPFL MACFNPETEE FQSVCRVMSG FSDAFYIEVM KSSTLTLLFN DETDGMKEFY1320
 1321 SEDKILAKKP PYYRTGETPD MWFSAEVVWE IRGADFTVSP VHSASLGLVH PSRGISVRFP1380
 1381 RFISKVTDRN PEECSTATDI AEMFHAQTRK MNITSQH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..401] PSI-BLAST 11.221849 Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain; Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain
    2 View Details [402..538] deduced N/A No confident structure predictions are available.
    3 View Details [539..761] MSA 3.139995 View MSA. No confident structure predictions are available.
    4 View Details [762..995] PSI-BLAST 3.221849 The crystal structure of murine p97/VCP at 3.6A
    5 View Details [996..1417] PSI-BLAST 33.522879 ATP-DEPENDENT DNA LIGASE FROM BACTERIOPHAGE T7 COMPLEX WITH ATP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle