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Protein Overview: gi|11994519, gi|...

General Information:
Name(s) found: gi|15228689 [NCBI NR]
gi|11994519 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|15228689|ref|NP_189584.1| transcription factor IIB (TFIIB) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|11994519|dbj|BAB02583.1| transcription initiation factor IIB (TFIIB)-like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 336 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    transcription factor complex [IEA]
    Biological Process: response to cadmium ion [IEP]
    Molecular Function: translation initiation factor activity [IEA]
    zinc ion binding [IEA]
    protein binding [IEA]
    RNA polymerase II transcription factor activity [ISS]
    transcription regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEETCLDCK RPTIMVVDHS SGDTICSECG LVLEAHIIEY SQEWRTFASD DNHSDRDPNR  60
   61 VGAATNPFLK SGDLVTIIEK PKETASSVLS KDDISTLFRA HNQVKNHEED LIKQAFEEIQ 120
  121 RMTDALDLDI VINSRACEIV SKYDGHANTK LRRGKKLNAI CAASVSTACR ELQLSRTLKE 180
  181 IAEVANGVDK KDIRKESLVI KRVLESHQTS VSASQAIINT GELVRRFCSK LDISQREIMA 240
  241 IPEAVEKAEN FDIRRNPKSV LAAIIFMISH ISQTNRKPIR EIGIVAEVVE NTIKNSVKDM 300
  301 YPYALKIIPN WYACESDIIK RLDGVITSWD SAKFSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] PSI-BLAST 3.69897 No description for 2r7gA was found.
    2 View Details [105..336] PSI-BLAST 49.0 Transcription factor IIB (TFIIB), core domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  6.34389570239956 bayes_pls_golite062009
  • cyclin-dependent protein kinase regulator activity
    		•  3.19553060844126 bayes_pls_golite062009
  • protein kinase regulator activity
    		•  2.87088741581791 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.795846725429 bayes_pls_golite062009
  • binding
    		•  2.4204867358489 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.04886889839181 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.00665312545368 bayes_pls_golite062009
  • DNA binding
    		•  1.94297811210385 bayes_pls_golite062009
  • transcription elongation regulator activity
    		•  1.69439693414478 bayes_pls_golite062009
  • kinase regulator activity
    		•  1.65109787211976 bayes_pls_golite062009
  • protein binding
    		•  1.47106731485576 bayes_pls_golite062009
  • transcription factor activity
    		•  1.21921365719206 bayes_pls_golite062009
  • transcription factor binding
    		•  0.749278791251235 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.729629809946521 bayes_pls_golite062009
  • positive transcription elongation factor activity
    		•  0.42590121577004 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.138191616709499 bayes_pls_golite062009
  • transcription activator activity
    		•  0.0696060248241566 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle