| Protein: | gi|11994519, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 336 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11994519, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
311.0 | [0..1] | [324..1] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MEEETCLDCK RPTIMVVDHS SGDTICSECG LVLEAHIIEY SQEWRTFASD DNHSDRDPNR 60
61 VGAATNPFLK SGDLVTIIEK PKETASSVLS KDDISTLFRA HNQV
|
| Detection Method: |  |
| Confidence: | 3.69897 |
| Match: | 2r7gA |
| Description: | No description for 2r7gA was found. |
|
Region A: Residues: [105-336] |
1 11 21 31 41 51
| | | | | |
1 KNHEEDLIKQ AFEEIQRMTD ALDLDIVINS RACEIVSKYD GHANTKLRRG KKLNAICAAS 60
61 VSTACRELQL SRTLKEIAEV ANGVDKKDIR KESLVIKRVL ESHQTSVSAS QAIINTGELV 120
121 RRFCSKLDIS QREIMAIPEA VEKAENFDIR RNPKSVLAAI IFMISHISQT NRKPIREIGI 180
181 VAEVVENTIK NSVKDMYPYA LKIIPNWYAC ESDIIKRLDG VITSWDSAKF SV
|
| Detection Method: | |
| Confidence: | 49.0 |
| Match: | 1c9bA |
| Description: | Transcription factor IIB (TFIIB), core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.34389570239956 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase regulator activity | 3.19553060844126 | bayes_pls_golite062009 |
| protein kinase regulator activity | 2.87088741581791 | bayes_pls_golite062009 |
| transcription regulator activity | 2.795846725429 | bayes_pls_golite062009 |
| binding | 2.4204867358489 | bayes_pls_golite062009 |
| nucleic acid binding | 2.04886889839181 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.00665312545368 | bayes_pls_golite062009 |
| DNA binding | 1.94297811210385 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.69439693414478 | bayes_pls_golite062009 |
| kinase regulator activity | 1.65109787211976 | bayes_pls_golite062009 |
| protein binding | 1.47106731485576 | bayes_pls_golite062009 |
| transcription factor activity | 1.21921365719206 | bayes_pls_golite062009 |
| transcription factor binding | 0.749278791251235 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.729629809946521 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 0.42590121577004 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.138191616709499 | bayes_pls_golite062009 |
| transcription activator activity | 0.0696060248241566 | bayes_pls_golite062009 |
