YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|6728986, gi|1...

General Information:
Name(s) found: gi|6728986 [NCBI NR]
gi|15232962 [NCBI NR]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • gi|6728986|gb|AAF26984.1|AC018363_29 putative histidyl tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|15232962|ref|NP_186925.1| histidyl-tRNA synthetase, putative / histidine--tRNA ligase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 479 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    cytoplasm [IEA]
    Biological Process: tRNA aminoacylation for protein translation [IEA]
    histidyl-tRNA aminoacylation [IEA][ISS]
    translation [IEA]
    Molecular Function: histidine-tRNA ligase activity [IEA][ISS]
    nucleotide binding [IEA]
    ATP binding [IEA]
    aminoacyl-tRNA ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSLMQCGEQ ILNLFNPEGR SFDSLLDKVK EIVESNENRR LPKLPKGTRD FAKEQMAVRE  60
   61 KAFSIIQNVF KRHGATALDT PVFELRETLM GKYGEDSKLV YDIADQGGEL CSLRYDLTVP 120
  121 FARYVAMNGI TSFKRYQIAK VYRRDNPSKG RYREFYQCDF DIAGLFEPMG PDFEIVKILT 180
  181 ELLDELEIGD YEVKLNHRKL LDGMLEICGV PPEKFRTICS SIDKLDKQSF EQVKKEMVEE 240
  241 KGLSSEIADR IGNFVKEKGA PLELLSKLRQ EGSEFLDNQS SREALDELSI MFEALKRSKC 300
  301 SERIVFDLSL ARGLDYYTGV IFEAVCIGAE VGSIGAGGRY DNLIGMFGTK QVPAVGMSLG 360
  361 IERVFNIMEE LNEKQKQVIR PTETQVLVSI MVDNKLAEAA ELVSQLWGAK INAEYLVSKR 420
  421 KEKHFNRAKE SGIPWMVMVG EKELSGSFVT LKKLEKGSEE KEDQTCTRDR FVEELKKLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..479] PSI-BLAST 78.30103 Histidyl-tRNA synthetase (HisRS), C-terminal domain; Histidyl-tRNA synthetase (HisRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.89468709683036 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.89468709683036 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.88410036819636 bayes_pls_golite062009
  • ligase activity
    		•  6.92073480193262 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  5.91343220471745 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  2.99105702052936 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.46505535069103 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.29229136935761 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.72324031407565 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • binding
    		•  0.521863822270226 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.375542987753806 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.281662799812287 bayes_pls_golite062009
  • DNA binding
    		•  0.0309732052586011 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.00572514744734753 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle