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Protein Overview: gi|7269961, gi|2...

General Information:
Name(s) found: gi|7269961 [NCBI NR]
gi|25407666 [NCBI NR]
gi|22137194 [NCBI NR]
gi|18086492 [NCBI NR]
gi|15234792 [NCBI NR]
Description(s) found:
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  • gi|7269961|emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis thaliana] [NCBI NR]
  • pir||A85358 hypothetical protein AT4g30600 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22137194|gb|AAM91442.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] [NCBI NR]
  • gi|18086492|gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] [NCBI NR]
  • gi|15234792|ref|NP_194789.1| signal recognition particle receptor alpha subunit family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9M0A0) Signal recognition particle receptor-like protein (AT4g30600/F17I23_60) [athaliana3702.FASTAC.txt]
  • AT4g30600/F17I23_60 [Arabidopsis thaliana]gi|7269961|emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis thaliana]gi|18086492|gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana]gi|25407666|pir||A85358 hypothetical prote [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Signal recognition particle receptor alpha subunit family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | signal recognition particle receptor alpha subunit family protein | chr4:14938148-14940606 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • signal recognition particle receptor-like protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • AT4g30600/F17I23_60 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GTP binding / GTPase/ RNA binding / nucleoside-triphosphatase/ nucleotide binding / signal recognition particle binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | signal recognition particle receptor alpha subunit family protein | chr4:14938142-14940600 REVERSE LENGTH=634 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT4g30600/F17I23_60 OS=Arabidopsis thaliana GN=AT4g30600 PE=2 SV=1 [ARATH-contam.fasta]
  • AT4g30600/F17I23_60 OS=Arabidopsis thaliana GN=At4g30600 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 634 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum [IDA]
    signal recognition particle, endoplasmic reticulum targeting [ISS]
    Biological Process: protein targeting [ISS]
    SRP-dependent cotranslational protein targeting to membrane [IEA]
    intracellular protein transport [IEA]
    Molecular Function: GTP binding [IEA][ISS]
    nucleotide binding [IEA]
    GTPase activity [IEA]
    7S RNA binding [IEA]
    nucleoside-triphosphatase activity [IEA]
    signal recognition particle binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK  60
   61 WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD PKRMAYDDFD ETFRQLRIEA 120
  121 EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL 180
  181 TNGHSNGNHQ MEDDSQETND LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG 240
  241 NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE 300
  301 EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM 360
  361 TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME DALVRILTPR RSIDILRDVH 420
  421 AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR 480
  481 RLQIPIFEKG YEKDPAVVAK EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ 540
  541 PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM 600
  601 VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 41.0 The Structure of the Mammalian SRP Receptor
    2 View Details [143..321] Pfam 26.853872 No description for PF04086.4 was found. No confident structure predictions are available.
    3 View Details [322..634] PSI-BLAST 67.0 No description for 2j289 was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  0.370693996929421 bayes_pls_golite062009
  • binding
    		•  0.173144351767878 bayes_pls_golite062009
  • transporter activity
    		•  0.170524751985967 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle