| Protein: | gi|7269961, gi|2... |
| Organism: | Arabidopsis thaliana |
| Length: | 634 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7269961, gi|2....
| Description | E-value | Query Range |
Subject Range |
|
|
396.0 | [0..1] | [634..1] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK 60
61 WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD PKRMAYDDFD ETFRQLRIEA 120
121 EARAEELRKT KQVGKPVTSV KK
|
| Detection Method: |  |
| Confidence: | 41.0 |
| Match: | 2fh5A |
| Description: | The Structure of the Mammalian SRP Receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 0.370693996929421 | bayes_pls_golite062009 |
| binding | 0.173144351767878 | bayes_pls_golite062009 |
| transporter activity | 0.170524751985967 | bayes_pls_golite062009 |
|
Region A: Residues: [143-321] |
1 11 21 31 41 51
| | | | | |
1 QGQVSKPGLE GGNKRVSSEG GSKKDDGDGG NKAKVSTLTN GHSNGNHQME DDSQETNDLA 60
61 NGKENTSSNV AVDLSKLQKL RSKGVRGRGG VRKTDSIGNK SSKVAEPAKK ATKKNRVWDD 120
121 AAPKQSKLDF TDSIDENGNN DHVDIVAADQ GESMMDKEEV FSSDSESEDD DEPGSDEKP
|
| Detection Method: | |
| Confidence: | 26.853872 |
| Match: | PF04086.4 |
| Description: | No description for PF04086.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [322-634] |
1 11 21 31 41 51
| | | | | |
1 AQAKKKGWFS SVFQSITGKA NLERTDLGPA LKALKERLMT KNVAEEIAEK LCESVEASLE 60
61 GKKLSSFTRI SSTVQAAMED ALVRILTPRR SIDILRDVHA AKEQRKPYVV VFVGVNGVGK 120
121 STNLAKVAYW LQQHKVSVMM AACDTFRSGA VEQLRTHARR LQIPIFEKGY EKDPAVVAKE 180
181 AIQEATRNGS DVVLVDTAGR MQDNEPLMRA LSKLINLNQP DLVLFVGEAL VGNDAVDQLS 240
241 KFNQKLSDLS TSGNPRLIDG ILLTKFDTID DKVGAALSMV YISGSPVMFV GCGQSYTDLK 300
301 KLNVKAIVKT LLK
|
| Detection Method: | |
| Confidence: | 67.0 |
| Match: | 2j289 |
| Description: | No description for 2j289 was found. |
