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Protein Overview: gi|15983773, gi|...

General Information:
Name(s) found: gi|7485750 [NCBI NR]
gi|7269804 [NCBI NR]
gi|4972052 [NCBI NR]
gi|18417320 [NCBI NR]
gi|15983773 [NCBI NR]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • pir||T08961 hypothetical protein F19B15.90 - Arabidopsis thaliana [NCBI NR]
  • gi|7269804|emb|CAB79664.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4972052|emb|CAB43920.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18417320|ref|NP_567820.1| emb2726 (embryo defective 2726); RNA binding / translation elongation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15983773|gb|AAL10483.1| AT4g29060/F19B15_90 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 953 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    chloroplast envelope [IDA]
    Biological Process: embryonic development ending in seed dormancy [NAS]
    response to cadmium ion [IEP]
    translational elongation [ISS]
    Molecular Function: RNA binding [IEA]
    translation elongation factor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATITPSSIS NAWLIPGASF TVKKSDCSIK CSFSRKAGKQ ILSSTQRLVL PLSTSLRLFP  60
   61 THGRQFVLHP HRRATGTDVV AAVEEQDSTP VVAEDKETVA SEKSDAPAPT SQSRGTARPG 120
  121 RKSEMPAVKN EELVPGATFT GKVRAIQPFG AFVDFGAFTD GLVHVSQLSD NFVKDVSSVV 180
  181 TIGQEVKVRL VEADIESKRI SLTMRENDDP PKRQSGGSDK PRSGGKRDGS KGGGQRKGEG 240
  241 FNSKFAKGQM LDGVVKNLTR SGAFITIGEG EEGFLPTAEE ADDGIGSMMM GGSSLQAGQE 300
  301 VKVRVLRIAR GRVTLTMKEE DDGKFDETTT QGVVHTATNP FMLAFRKNEE IAAFLDKREE 360
  361 EAEKPPVETP VEPEAEASVT SAEVEESVCV PAEVTSEEVP SSETPKVVEE EVIATKAEDD 420
  421 SPEKEEQTET LAAAAEAEEV VPPIPETKSE EEIVENSIPP NSATDEVSSP EALASEEVEK 480
  481 EQVVAETPVD EVKTPAPVVT EASSEESGNT ATAESIKGIS PALVKQLREE TGAGMMDCKN 540
  541 ALSESEGDMV KAQEYLRKKG LASADKKASR ATSEGRIGAY IHDSRIGVLL EVNCETDFVS 600
  601 RGDIFKELVD DLAMQVAACP QVEYLVTEDV SEEIVKKEKE IEMQKEDLLS KPEQIREKIV 660
  661 DGRIKKRLDS LALLEQPYIK DDKVIVKDLV KQRIATIGEN IKVKRFVRYT LGEGLEKKSQ 720
  721 DFAAEVAAQT AAKPKAKEEP KAEEAKEAVA SPPTTVVSAA LVKQLREETG AGMMDCKKAL 780
  781 AATGGDLEKA QEFLRKKGLS SADKKSSRLA SEGRIGSYIH DSRIGVLIEV NCETDFVGRS 840
  841 EKFKELVDDL AMQAVANPQV QYVSIEDIPE EIKQKEKEIE MQREDLLSKP ENIREKIVEG 900
  901 RISKRLGEWA LLEQPYIKDD SVLVKDLVKQ TVATLGENIK VRRFVKFTLG EDN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..236] PSI-BLAST 39.522879 No description for 2oceA was found.
    2 View Details [237..432] PSI-BLAST 15.522879 Crystal structure of intact alpha subunit of aIF2 from Pyrococcus abyssi
    3 View Details [433..732] PSI-BLAST 70.30103 Elongation factor Ts (EF-Ts), N-terminal domain; Elongation factor Ts (EF-Ts), dimerisation domain
    4 View Details [733..953] PSI-BLAST 53.0 Elongation factor Ts (EF-Ts), N-terminal domain; Elongation factor Ts (EF-Ts), dimerisation domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • translation elongation factor activity
    		•  2.89277305308325 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.65948797337693 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.48826676464117 bayes_pls_golite062009
  • structural molecule activity
    		•  1.20191382777151 bayes_pls_golite062009
  • binding
    		•  0.902189695502298 bayes_pls_golite062009
  • DNA binding
    		•  0.9001707539121 bayes_pls_golite062009
  • translation regulator activity
    		•  0.75912526777056 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.71309127606641 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.0230813520728701 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  0.01639583962268 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.0113916053033905 bayes_pls_golite062009
  • endonuclease activity
    		•  0.0109757241468094 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • translation elongation factor activity
    		•  6.76682355840961 bayes_pls_golite062009
  • translation regulator activity
    		•  3.25869848432297 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  3.25321147265639 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.21304885949831 bayes_pls_golite062009
  • binding
    		•  1.69337453855821 bayes_pls_golite062009
  • catalytic activity
    		•  0.628189184116182 bayes_pls_golite062009
    4
    Term Confidence Notes
  • translation elongation factor activity
    		•  1.56204364901221 bayes_pls_golite062009
  • catalytic activity
    		•  0.628189184116182 bayes_pls_golite062009
  • binding
    		•  0.471495155961911 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle