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View Structure Prediction Details

Protein: gi|15983773, gi|...
Organism: Arabidopsis thaliana
Length: 953 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15983773, gi|....

Description E-value Query
Range		 Subject
Range
gi|53794021 - gi|53794021|gb|AAU93601.1| chloroplast polyprotein of elongation factor Ts precursor [Arabidopsis th...
 445.0 [0..1] [714..1]

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Predicted Domain #1
Region A:
Residues: [1-236] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATITPSSIS NAWLIPGASF TVKKSDCSIK CSFSRKAGKQ ILSSTQRLVL PLSTSLRLFP  60
   61 THGRQFVLHP HRRATGTDVV AAVEEQDSTP VVAEDKETVA SEKSDAPAPT SQSRGTARPG 120
  121 RKSEMPAVKN EELVPGATFT GKVRAIQPFG AFVDFGAFTD GLVHVSQLSD NFVKDVSSVV 180
  181 TIGQEVKVRL VEADIESKRI SLTMRENDDP PKRQSGGSDK PRSGGKRDGS KGGGQR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.522879
Match: 2oceA
Description: No description for 2oceA was found.

Predicted functions:

Term Confidence Notes
translation elongation factor activity 2.89277305308325 bayes_pls_golite062009
nucleic acid binding 1.65948797337693 bayes_pls_golite062009
structural constituent of ribosome 1.48826676464117 bayes_pls_golite062009
structural molecule activity 1.20191382777151 bayes_pls_golite062009
binding 0.902189695502298 bayes_pls_golite062009
DNA binding 0.9001707539121 bayes_pls_golite062009
translation regulator activity 0.75912526777056 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.71309127606641 bayes_pls_golite062009
deoxyribonuclease activity 0.0230813520728701 bayes_pls_golite062009
endodeoxyribonuclease activity 0.01639583962268 bayes_pls_golite062009
DNA helicase activity 0.0113916053033905 bayes_pls_golite062009
endonuclease activity 0.0109757241468094 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [237-432] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGEGFNSKFA KGQMLDGVVK NLTRSGAFIT IGEGEEGFLP TAEEADDGIG SMMMGGSSLQ  60
   61 AGQEVKVRVL RIARGRVTLT MKEEDDGKFD ETTTQGVVHT ATNPFMLAFR KNEEIAAFLD 120
  121 KREEEAEKPP VETPVEPEAE ASVTSAEVEE SVCVPAEVTS EEVPSSETPK VVEEEVIATK 180
  181 AEDDSPEKEE QTETLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 1yz6A
Description: Crystal structure of intact alpha subunit of aIF2 from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [433-732] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAEAEEVVP PIPETKSEEE IVENSIPPNS ATDEVSSPEA LASEEVEKEQ VVAETPVDEV  60
   61 KTPAPVVTEA SSEESGNTAT AESIKGISPA LVKQLREETG AGMMDCKNAL SESEGDMVKA 120
  121 QEYLRKKGLA SADKKASRAT SEGRIGAYIH DSRIGVLLEV NCETDFVSRG DIFKELVDDL 180
  181 AMQVAACPQV EYLVTEDVSE EIVKKEKEIE MQKEDLLSKP EQIREKIVDG RIKKRLDSLA 240
  241 LLEQPYIKDD KVIVKDLVKQ RIATIGENIK VKRFVRYTLG EGLEKKSQDF AAEVAAQTAA 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.30103
Match: 1efuB
Description: Elongation factor Ts (EF-Ts), N-terminal domain; Elongation factor Ts (EF-Ts), dimerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation elongation factor activity 6.76682355840961 bayes_pls_golite062009
translation regulator activity 3.25869848432297 bayes_pls_golite062009
translation factor activity, nucleic acid binding 3.25321147265639 bayes_pls_golite062009
nucleic acid binding 2.21304885949831 bayes_pls_golite062009
binding 1.69337453855821 bayes_pls_golite062009
catalytic activity 0.628189184116182 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [733-953] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPKAKEEPKA EEAKEAVASP PTTVVSAALV KQLREETGAG MMDCKKALAA TGGDLEKAQE  60
   61 FLRKKGLSSA DKKSSRLASE GRIGSYIHDS RIGVLIEVNC ETDFVGRSEK FKELVDDLAM 120
  121 QAVANPQVQY VSIEDIPEEI KQKEKEIEMQ REDLLSKPEN IREKIVEGRI SKRLGEWALL 180
  181 EQPYIKDDSV LVKDLVKQTV ATLGENIKVR RFVKFTLGED N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.0
Match: 1aipC
Description: Elongation factor Ts (EF-Ts), N-terminal domain; Elongation factor Ts (EF-Ts), dimerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation elongation factor activity 1.56204364901221 bayes_pls_golite062009
catalytic activity 0.628189184116182 bayes_pls_golite062009
binding 0.471495155961911 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle