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Protein Overview: MTR4_ARATH

General Information:
Name(s) found: MTR4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|51971869|dbj|BAD44599.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|5080810|gb|AAD39319.1|AC007258_8 Very similar to helicases [Arabidopsis thaliana] [NCBI NR]
  • pir||E96621 hypothetical protein F23H11.8 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15218905|ref|NP_176185.1| ATP-dependent RNA helicase, putative [Arabidopsis thaliana] [NCBI NR]
  • DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana GN=MTR4 PE=2 SV=1 [Swiss-Prot]
  • (Q9XIF2) F23H11.8 protein [athaliana3702.FASTAC.txt]
  • Very similar to helicases [Arabidopsis thaliana]gi|51971869|dbj|BAD44599.1| hypothetical protein [Arabidopsis thaliana]gi|15218905|ref|NP_176185.1| ATP-dependent RNA helicase, putative [Arabidopsis thaliana]gi|25307593|pir||E96621 hypothetical protein [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 ATP-dependent RNA helicase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ATP-dependent RNA helicase, putative | chr1:21988236-21993775 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Very similar to helicases [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr1:21984571-21990110 REVERSE LENGTH=988 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F23H11.8 protein OS=Arabidopsis thaliana GN=F23H11.8 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 988 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [IEA]
    ATP-dependent helicase activity [IEA][ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP  60
   61 AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS YAIAMSLKEN QRVIYTSPIK 120
  121 ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD 180
  181 EVHYMRDSER GVVWEESIVM APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR 240
  241 PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG 300
  301 KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS 360
  361 AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV IEILFQEGLI KCLFATETFS 420
  421 IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA 480
  481 VAKSMLKGSA DSLNSAFHLS YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK 540
  541 SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN 600
  601 DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK 660
  661 KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL EARENALKKV SELLSRHPDG 720
  721 IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS 780
  781 LKKTVRSSTA LAFKDELKAR KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS 840
  841 GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID 900
  901 VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI 960
  961 GETQLEAKLE EAVSKIKRDI VFAASLYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..697] PSI-BLAST 40.39794 No description for 2va8A was found.
    2 View Details [698..931] PSI-BLAST 35.522879 No description for 2q0zX was found.
    3 View Details [932..988] Pfam 5.79588 No description for PF08148.4 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle