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Protein Overview: PEX16_ARATH

General Information:
Name(s) found: PEX16_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|51968934|dbj|BAD43159.1| shrunken seed protein (SSE1) [Arabidopsis thaliana] [NCBI NR]
  • gi|20197055|gb|AAM14899.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18406863|ref|NP_566053.1| SSE1 (SHRUNKEN SEED 1) [Arabidopsis thaliana] [NCBI NR]
  • Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana GN=PEX16 PE=1 SV=1 [Swiss-Prot]
  • (Q8S8S1) Expressed protein [athaliana3702.FASTAC.txt]
  • expressed protein [Arabidopsis thaliana]gi|51968934|dbj|BAD43159.1| shrunken seed protein (SSE1) [Arabidopsis thaliana]gi|18406863|ref|NP_566053.1| shrunken seed protein (SSE1) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Shrunken seed protein (SSE1) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SSE, PEX16, SSE1 | SSE1 (SHRUNKEN SEED 1) | chr2:18830539-18832675 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • shrunken seed protein (SSE1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SSE1 (SHRUNKEN SEED 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SSE1, SSE, PEX16, ATPEX16 | shrunken seed protein (SSE1) | chr2:18823465-18825601 REVERSE LENGTH=367 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 367 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum membrane [IDA]
    peroxisome [IDA]
    Biological Process: peroxisome organization [IGI][IMP]
    fatty acid biosynthetic process [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAYKQWVWR NREYVQSFGS FANGLTWLLP EKFSASEIGP EAVTAFLGIF STINEHIIEN  60
   61 APTPRGHVGS SGNDPSLSYP LLIAILKDLE TVVEVAAEHF YGDKKWNYII LTEAMKAVIR 120
  121 LALFRNSGYK MLLQGGETPN EEKDSNQSES QNRAGNSGRN LGPHGLGNQN HHNPWNLEGR 180
  181 AMSALSSFGQ NARTTTSSTP GWSRRIQHQQ AVIEPPMIKE RRRTMSELLT EKGVNGALFA 240
  241 IGEVLYITRP LIYVLFIRKY GVRSWIPWAI SLSVDTLGMG LLANSKWWGE KSKQVHFSGP 300
  301 EKDELRRRKL IWALYLMRDP FFTKYTRQKL ESSQKKLELI PLIGFLTEKI VELLEGAQSR 360
  361 YTYISGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] MSA 2.02798 View MSA. No confident structure predictions are available.
    2 View Details [129..367] MSA 1.029979 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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