YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX16_ARATH
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAYKQWVWR NREYVQSFGS FANGLTWLLP EKFSASEIGP EAVTAFLGIF STINEHIIEN  60
   61 APTPRGHVGS SGNDPSLSYP LLIAILKDLE TVVEVAAEHF YGDKKWNYII LTEAMKAVIR 120
  121 LALFRNSGYK MLLQGGETPN EEKDSNQSES QNRAGNSGRN LGPHGLGNQN HHNPWNLEGR 180
  181 AMSALSSFGQ NARTTTSSTP GWSRRIQHQQ AVIEPPMIKE RRRTMSELLT EKGVNGALFA 240
  241 IGEVLYITRP LIYVLFIRKY GVRSWIPWAI SLSVDTLGMG LLANSKWWGE KSKQVHFSGP 300
  301 EKDELRRRKL IWALYLMRDP FFTKYTRQKL ESSQKKLELI PLIGFLTEKI VELLEGAQSR 360
  361 YTYISGS

Type	Start	End	Confidence
Non-Cytoplasmic	1	264	0.53
Transmembrane Helix	265	284	0.56
Cytoplasmic	285	367	0.52