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Protein Overview: SEP1_ARATH

General Information:
Name(s) found: SEP1_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 251 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: flower development [IDA]
    ovule development [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
   61 SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG RYENLQRQQR NLLGEDLGPL 120
  121 NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS 180
  181 HHMGGGGGWE GGEQNVTYAH HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ 240
  241 QGNGYIPGWM L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] PSI-BLAST 22.39794 Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
    2 View Details [84..251] Pfam 33.022276 No description for PF01486.8 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.47820295830817 bayes_pls_golite062009
  • DNA binding
    		•  4.34885522982729 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.22473647889076 bayes_pls_golite062009
  • binding
    		•  3.73009730829487 bayes_pls_golite062009
  • transcription factor activity
    		•  3.68208249443337 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.65616273505159 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.72567983955215 bayes_pls_golite062009
  • transcription activator activity
    		•  1.38059870614713 bayes_pls_golite062009
  • protein binding
    		•  1.27646601063623 bayes_pls_golite062009
  • DNA bending activity
    		•  0.167327205417291 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle