| Protein: | SEP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 251 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
274.0 | [0..1] | [251..1] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60
61 SNMLKTLDRY QKCSYGSIEV NNK
|
| Detection Method: |  |
| Confidence: | 22.39794 |
| Match: | 1tqeP |
| Description: | Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.47820295830817 | bayes_pls_golite062009 |
| DNA binding | 4.34885522982729 | bayes_pls_golite062009 |
| nucleic acid binding | 4.22473647889076 | bayes_pls_golite062009 |
| binding | 3.73009730829487 | bayes_pls_golite062009 |
| transcription factor activity | 3.68208249443337 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.65616273505159 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.72567983955215 | bayes_pls_golite062009 |
| transcription activator activity | 1.38059870614713 | bayes_pls_golite062009 |
| protein binding | 1.27646601063623 | bayes_pls_golite062009 |
| DNA bending activity | 0.167327205417291 | bayes_pls_golite062009 |
|
Region A: Residues: [84-251] |
1 11 21 31 41 51
| | | | | |
1 PAKELENSYR EYLKLKGRYE NLQRQQRNLL GEDLGPLNSK ELEQLERQLD GSLKQVRSIK 60
61 TQYMLDQLSD LQNKEQMLLE TNRALAMKLD DMIGVRSHHM GGGGGWEGGE QNVTYAHHQA 120
121 QSQGLYQPLE CNPTLQMGYD NPVCSEQITA TTQAQAQQGN GYIPGWML
|
| Detection Method: | |
| Confidence: | 33.022276 |
| Match: | PF01486.8 |
| Description: | No description for PF01486.8 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
