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Protein Overview: SCC13_ARATH

General Information:
Name(s) found: SCC13_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 693 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    nuclear cohesin complex [ISS]
    nucleolus [IDA]
    Biological Process: megagametogenesis [IMP]
    pollen development [IMP]
    mitosis [IEP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYSHTLLAR KGPLGTVWCA AHVHQRLKKS QYTSINIPDT VDNIMFPEVP LALRTSSHLL  60
   61 VGVVRIYSKK VDYLYNDWNL LNTWVAKAFV STQVNLPEDA RQAPPESVTL PQALNLDEFD 120
  121 LEDDTLDMEF DNHTRSEEDI TLTDQIPTGI DPYVAVTFDE DIISESIPMD VDQSTEPVSR 180
  181 HTGEIDVETA HETGPDNEPR DSNIAFDTGT YSPRNVTEEF TEVQDPRQSN LTEERIPNSE 240
  241 RNDATSPGTV PEIERMRDAA HDLSPTSHPS FAAQQQDVRV ERTESLDETL NEKEPTIPSI 300
  301 DEEMLNSGRH SAFELRSGSP GSAAGSEEER ADFVHPSPQL VLQPSPPPQP QRRARKRKNF 360
  361 DGVTVLTNKN ISERLKDPSD TLRKRKKMPS SKLKFWRMNN QSRKDQNFNE PLFTGFSDDL 420
  421 RNVFEKDYVA SKPHLAVSDE TLPEPASVSP TREAEVEINP VSPIPDSTNP DSTVQLSPAQ 480
  481 QTEDVLDSAG PRPAHAESVA TEAQSPRTFD NDDMGIEHLR DGGFPVYMPS PPPRSSPFRT 540
  541 DDFTTQSGNW ETESYRTEPS TSTVPEDLPG QRNLGLSPVS ERTDEELYFL EVGGNSPVGT 600
  601 PASQDSAALT GRARALAQYL KQRSSSSPTT SSHPSGDLSL SEILAGKTRK LAARMFFETL 660
  661 VLKSRGLIDM QQDRPYGDIA LKLMPALFSK VQT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] Pfam 65.619789 No description for PF04825.4 was found. No confident structure predictions are available.
    2 View Details [149..269] deduced N/A No confident structure predictions are available.
    3 View Details [270..474] deduced N/A No confident structure predictions are available.
    4 View Details [475..592] deduced N/A No confident structure predictions are available.
    5 View Details [593..693] PSI-BLAST 15.39794 Sc Smc1hd:Scc1-C complex, ATPgS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.73

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle