| Protein: | SCC13_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 693 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCC13_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
461.0 | [0..1] | [693..1] |
|
Region A: Residues: [1-148] |
1 11 21 31 41 51
| | | | | |
1 MFYSHTLLAR KGPLGTVWCA AHVHQRLKKS QYTSINIPDT VDNIMFPEVP LALRTSSHLL 60
61 VGVVRIYSKK VDYLYNDWNL LNTWVAKAFV STQVNLPEDA RQAPPESVTL PQALNLDEFD 120
121 LEDDTLDMEF DNHTRSEEDI TLTDQIPT
|
| Detection Method: |  |
| Confidence: | 65.619789 |
| Match: | PF04825.4 |
| Description: | No description for PF04825.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [149-269] |
1 11 21 31 41 51
| | | | | |
1 GIDPYVAVTF DEDIISESIP MDVDQSTEPV SRHTGEIDVE TAHETGPDNE PRDSNIAFDT 60
61 GTYSPRNVTE EFTEVQDPRQ SNLTEERIPN SERNDATSPG TVPEIERMRD AAHDLSPTSH 120
121 P
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [270-474] |
1 11 21 31 41 51
| | | | | |
1 SFAAQQQDVR VERTESLDET LNEKEPTIPS IDEEMLNSGR HSAFELRSGS PGSAAGSEEE 60
61 RADFVHPSPQ LVLQPSPPPQ PQRRARKRKN FDGVTVLTNK NISERLKDPS DTLRKRKKMP 120
121 SSKLKFWRMN NQSRKDQNFN EPLFTGFSDD LRNVFEKDYV ASKPHLAVSD ETLPEPASVS 180
181 PTREAEVEIN PVSPIPDSTN PDSTV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [475-592] |
1 11 21 31 41 51
| | | | | |
1 QLSPAQQTED VLDSAGPRPA HAESVATEAQ SPRTFDNDDM GIEHLRDGGF PVYMPSPPPR 60
61 SSPFRTDDFT TQSGNWETES YRTEPSTSTV PEDLPGQRNL GLSPVSERTD EELYFLEV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [593-693] |
1 11 21 31 41 51
| | | | | |
1 GGNSPVGTPA SQDSAALTGR ARALAQYLKQ RSSSSPTTSS HPSGDLSLSE ILAGKTRKLA 60
61 ARMFFETLVL KSRGLIDMQQ DRPYGDIALK LMPALFSKVQ T
|
| Detection Method: | |
| Confidence: | 15.39794 |
| Match: | 1w1wE |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
