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Protein Overview: SCC12_ARATH

General Information:
Name(s) found: SCC12_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 810 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    nuclear cohesin complex [ISS]
    Biological Process: mitosis [IEP]
    double-strand break repair [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYSHCLVSR KGPLGAIWVA AYFFKKLKKS QVKATHIPSS VDQILQKELD ALTYRVLAYL  60
   61 LLGVVRIYSK KVDFLFDDCN KALIGVKEFV AKERNREKTG VSLPASIECF SIALPERFEL 120
  121 DAFDLGVLED FHGGNVKPHE DITLKDGSQE TERMDMYSME RFDMEEDLLF TFHETFSTNH 180
  181 NENKHESFAH DMELDAENVR DTTEEASVRV VEAEPLDSNE PSRDHQNASR HREDPESDDI 240
  241 LLEPQMSEDI RIAQEEDTVR ETICTIVQRL VDSHESSGDN LHRDGHTENL ESEKTSKKTS 300
  301 CEEMQHDRSL PSECGIPEAI HGIEDQPSGA TRINGEKEIP EMSTLEKPEP VSVTGSRDLQ 360
  361 EGVEKCRDHN EAEMADFELF HGSHKEQSET SEVNLHGSEK GFLSDMTVSK DPSSEFNATD 420
  421 TPVTVTPKTP SRLKISEGGT SPQFSIIPTP AAKESSRVSR KRKCLIDDEV IIPNKVMKEM 480
  481 IEDSSKLLAK RRNVPHTDCP ERRTKRFANP FRSFLEPLIQ YGSSDLQSLF CQPIKLKNWA 540
  541 TTGTPKDTKI ARHKEKSSLD TVRSPGVILS SDQTENTQEI METPQAAALA GLKVTAGNSN 600
  601 VVSVEMGASS TTSGTAHQTE NAAETPVKPS VIAPETPVRT SEQTVIAPET PVVSEQVEIA 660
  661 PETPVRESMS KRFFKDPGTC YKKSRPASPF TSFEEHPSVY YVENRDLDTI LMNDEQVNAD 720
  721 ERQDLQQETW SSRTRNVAKF LEKTFLEQRE REEEEKVSLL QLCRGRTQKE SARLFYETLV 780
  781 LKTKGYVEVK QNHPYSDVFL MRVSRPQKAC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] Pfam 52.387216 No description for PF04825.4 was found. No confident structure predictions are available.
    2 View Details [107..345] deduced N/A No confident structure predictions are available.
    3 View Details [346..591] MSA 4.259996 View MSA. No confident structure predictions are available.
    4 View Details [592..726] deduced N/A No confident structure predictions are available.
    5 View Details [727..810] PSI-BLAST 3.522879 Sc Smc1hd:Scc1-C complex, ATPgS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle