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Protein Overview: PHYB_ARATH

General Information:
Name(s) found: PHYB_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1172 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: stomatal complex development [IMP]
    red light signaling pathway [IMP]
    regulation of transcription, DNA-dependent [ISS]
    abscisic acid metabolic process [IMP]
    gravitropism [IMP]
    jasmonic acid mediated signaling pathway [IMP]
    response to cold [IMP]
    entrainment of circadian clock [IMP]
    phototropism [IMP]
    circadian regulation of calcium ion oscillation [IMP]
    transpiration [IMP]
    photosynthesis [IMP]
    regulation of seed germination [IMP]
    regulation of defense response [IMP]
    response to low fluence red light stimulus [IMP]
    Molecular Function: G-protein coupled photoreceptor activity [ISS]
    red or far-red light photoreceptor activity [IMP]
    protein histidine kinase activity [ISS]
    signal transducer activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ  60
   61 YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ ITAYLSRIQR GGYIQPFGCM 120
  121 IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV 180
  181 AREITLLNPV WIHSKNTGKP FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR 240
  241 AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG 300
  301 LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ 360
  361 YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV VCHHTSSRCI PFPLRYACEF 420
  421 LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA 480
  481 FLYHGKYYPL GVAPSEVQIK DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA 540
  541 VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE 600
  601 TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI 660
  661 ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV SDLIYKENEA TVNKLLSRAL 720
  721 RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF 780
  781 INIQGDYKAI VHSPNPLIPP IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS 840
  841 CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA 900
  901 FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE 960
  961 DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF FLGSVINAIV SQAMFLLRDR1020
 1021 GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF1080
 1081 AAIRTEFRMA CPGEGLPPEL VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER1140
 1141 SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] deduced N/A No confident structure predictions are available.
    2 View Details [97..489] PSI-BLAST 85.154902 No description for 2oolA was found.
    3 View Details [490..629] MSA 1.490979 View MSA. No confident structure predictions are available.
    4 View Details [630..793] PSI-BLAST 6.69897 Crystal Structure of the heme PAS sensor domain of Ec DOS (ferric form)
    5 View Details [794..905] FFAS03 5.64 No description for 2gj3A was found.
    6 View Details [906..1172] PSI-BLAST 36.69897 Structure of the entire cytoplasmic portion of a sensor histidine kinase protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.19946768247464 bayes_pls_golite062009
  • red or far-red light photoreceptor activity
    		•  1.13074672917763 bayes_pls_golite062009
  • protein kinase activity
    		•  1.00118133270434 bayes_pls_golite062009
  • protein binding
    		•  0.99399316911894 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.928137265144727 bayes_pls_golite062009
  • kinase activity
    		•  0.909555223367033 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.840255266457938 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.74942164276392 bayes_pls_golite062009
  • transferase activity
    		•  0.711739864299385 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.6782569041078 bayes_pls_golite062009
  • DNA binding
    		•  0.59423108872862 bayes_pls_golite062009
  • catalytic activity
    		•  0.285447488878019 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0681626667420201 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  1.19946768247464 bayes_pls_golite062009
  • protein kinase activity
    		•  1.00118133270434 bayes_pls_golite062009
  • protein binding
    		•  0.99399316911894 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.928137265144727 bayes_pls_golite062009
  • kinase activity
    		•  0.909555223367033 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.840255266457938 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.74942164276392 bayes_pls_golite062009
  • transferase activity
    		•  0.711739864299385 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.6782569041078 bayes_pls_golite062009
  • DNA binding
    		•  0.59423108872862 bayes_pls_golite062009
  • catalytic activity
    		•  0.285447488878019 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0681626667420201 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle