| Protein: | PHYB_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1172 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHYB_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
1188.0 | [0..19] | [1172..15] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ 60
61 YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [97-489] |
1 11 21 31 41 51
| | | | | |
1 PEQQITAYLS RIQRGGYIQP FGCMIAVDES SFRIIGYSEN AREMLGIMPQ SVPTLEKPEI 60
61 LAMGTDVRSL FTSSSSILLE RAFVAREITL LNPVWIHSKN TGKPFYAILH RIDVGVVIDL 120
121 EPARTEDPAL SIAGAVQSQK LAVRAISQLQ ALPGGDIKLL CDTVVESVRD LTGYDRVMVY 180
181 KFHEDEHGEV VAESKRDDLE PYIGLHYPAT DIPQASRFLF KQNRVRMIVD CNATPVLVVQ 240
241 DDRLTQSMCL VGSTLRAPHG CHSQYMANMG SIASLAMAVI INGNEDDGSN VASGRSSMRL 300
301 WGLVVCHHTS SRCIPFPLRY ACEFLMQAFG LQLNMELQLA LQMSEKRVLR TQTLLCDMLL 360
361 RDSPAGIVTQ SPSIMDLVKC DGAAFLYHGK YYP
|
| Detection Method: | |
| Confidence: | 85.154902 |
| Match: | 2oolA |
| Description: | No description for 2oolA was found. |
| Term | Confidence | Notes |
| binding | 1.19946768247464 | bayes_pls_golite062009 |
| red or far-red light photoreceptor activity | 1.13074672917763 | bayes_pls_golite062009 |
| protein kinase activity | 1.00118133270434 | bayes_pls_golite062009 |
| protein binding | 0.99399316911894 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.928137265144727 | bayes_pls_golite062009 |
| kinase activity | 0.909555223367033 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.840255266457938 | bayes_pls_golite062009 |
| transcription regulator activity | 0.74942164276392 | bayes_pls_golite062009 |
| transferase activity | 0.711739864299385 | bayes_pls_golite062009 |
| nucleic acid binding | 0.6782569041078 | bayes_pls_golite062009 |
| DNA binding | 0.59423108872862 | bayes_pls_golite062009 |
| catalytic activity | 0.285447488878019 | bayes_pls_golite062009 |
| transcription factor activity | 0.0681626667420201 | bayes_pls_golite062009 |
|
Region A: Residues: [490-629] |
1 11 21 31 41 51
| | | | | |
1 LGVAPSEVQI KDVVEWLLAN HADSTGLSTD SLGDAGYPGA AALGDAVCGM AVAYITKRDF 60
61 LFWFRSHTAK EIKWGGAKHH PEDKDDGQRM HPRSSFQAFL EVVKSRSQPW ETAEMDAIHS 120
121 LQLILRDSFK ESEAAMNSKV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [630-793] |
1 11 21 31 41 51
| | | | | |
1 VDGVVQPCRD MAGEQGIDEL GAVAREMVRL IETATVPIFA VDAGGCINGW NAKIAELTGL 60
61 SVEEAMGKSL VSDLIYKENE ATVNKLLSRA LRGDEEKNVE VKLKTFSPEL QGKAVFVVVN 120
121 ACSSKDYLNN IVGVCFVGQD VTSQKIVMDK FINIQGDYKA IVHS
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1v9yA |
| Description: | Crystal Structure of the heme PAS sensor domain of Ec DOS (ferric form) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.19946768247464 | bayes_pls_golite062009 |
| protein kinase activity | 1.00118133270434 | bayes_pls_golite062009 |
| protein binding | 0.99399316911894 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.928137265144727 | bayes_pls_golite062009 |
| kinase activity | 0.909555223367033 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.840255266457938 | bayes_pls_golite062009 |
| transcription regulator activity | 0.74942164276392 | bayes_pls_golite062009 |
| transferase activity | 0.711739864299385 | bayes_pls_golite062009 |
| nucleic acid binding | 0.6782569041078 | bayes_pls_golite062009 |
| DNA binding | 0.59423108872862 | bayes_pls_golite062009 |
| catalytic activity | 0.285447488878019 | bayes_pls_golite062009 |
| transcription factor activity | 0.0681626667420201 | bayes_pls_golite062009 |
|
Region A: Residues: [794-905] |
1 11 21 31 41 51
| | | | | |
1 PNPLIPPIFA ADENTCCLEW NMAMEKLTGW SRSEVIGKMI VGEVFGSCCM LKGPDALTKF 60
61 MIVLHNAIGG QDTDKFPFPF FDRNGKFVQA LLTANKRVSL EGKVIGAFCF LQ
|
| Detection Method: | |
| Confidence: | 5.64 |
| Match: | 2gj3A |
| Description: | No description for 2gj3A was found. |
|
Region A: Residues: [906-1172] |
1 11 21 31 41 51
| | | | | |
1 IPSPELQQAL AVQRRQDTEC FTKAKELAYI CQVIKNPLSG MRFANSLLEA TDLNEDQKQL 60
61 LETSVSCEKQ ISRIVGDMDL ESIEDGSFVL KREEFFLGSV INAIVSQAMF LLRDRGLQLI 120
121 RDIPEEIKSI EVFGDQIRIQ QLLAEFLLSI IRYAPSQEWV EIHLSQLSKQ MADGFAAIRT 180
181 EFRMACPGEG LPPELVRDMF HSSRWTSPEG LGLSVCRKIL KLMNGEVQYI RESERSYFLI 240
241 ILELPVPRKR PLSTASGSGD MMLMMPY
|
| Detection Method: | |
| Confidence: | 36.69897 |
| Match: | 2c2aA |
| Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |
|
