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Protein Overview: PSD3A_ARATH

General Information:
Name(s) found: PSD3A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|32700016|gb|AAP86658.1| 26S proteasome subunit RPN3a [Arabidopsis thaliana] [NCBI NR]
  • gi|30316389|sp|Q9LNU4.3|PSD31_ARATH RecName: Full=Probable 26S proteasome non-ATPase regulatory subunit 3a; Short=26S proteasome subunit S3-a; AltName: Full=Protein EMBRYO DEFECTIVE 2719 [NCBI NR]
  • gi|15223800|ref|NP_173447.1| EMB2719 (EMBRYO DEFECTIVE 2719); enzyme regulator [Arabidopsis thaliana] [NCBI NR]
  • 26S proteasome non-ATPase regulatory subunit 3 homolog A OS=Arabidopsis thaliana GN=RPN3A PE=1 SV=3 [Swiss-Prot]
  • Probable 26S proteasome non-ATPase regulatory subunit 3a OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3 [Swiss-Prot]
  • (Q9LNU4) Probable 26S proteasome non-ATPase regulatory subunit 3a (26S proteasome subunit S3-a) [Swiss-Prot]
  • 26S proteasome subunit RPN3a [Arabidopsis thaliana]gi|30316389|sp|Q9LNU4|PD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a (26S proteasome subunit S3-a)gi|15223800|ref|NP_173447.1| 26S proteasome regulatory subunit S3, putative (RPN3) [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable 26S proteasome non-ATPase regulatory subunit 3a [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EMB2719 | EMB2719 (EMBRYO DEFECTIVE 2719) | chr1:7001400-7004145 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • EMB2719 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 26S proteasome subunit RPN3a [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Probable 26S proteasome non-ATPase regulatory subunit 3a (26S proteasome subunit S3-a) [nr-271106-contam.fasta]
  • | Symbols: EMB2719, HAP15 | PAM domain (PCI/PINT associated module) protein | chr1:7001409-7004154 REVERSE LENGTH=488 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Probable 26S proteasome non-ATPase regulatory subunit 3a OS=Arabidopsis thaliana GN=EMB2719 PE=2 SV=3 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 488 amino acids

    Gene Ontology:
    Cellular Component: proteasome regulatory particle, lid subcomplex [ISS]
    plasma membrane [IDA]
    Biological Process: embryonic development ending in seed dormancy [NAS]
    ubiquitin-dependent protein catabolic process [TAS]
    Molecular Function: enzyme regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK  60
   61 LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT ASSATQAAPS KHLPAELEIY 120
  121 CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE 180
  181 IRGTLLALHH SATLRHDELG QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC 240
  241 RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI 300
  301 FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL 360
  361 RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD GAIDATIDHK NGCMVSKETG 420
  421 DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM 480
  481 AEEDDDDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] MSA 1.228996 View MSA. No confident structure predictions are available.
    2 View Details [88..295] PSI-BLAST 4.69897 Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form)
    3 View Details [296..488] PSI-BLAST 10.39794 Solution structure of the PCI domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.50995556050336 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38144578566524 bayes_pls_golite062009
  • binding
    		•  3.33026160538031 bayes_pls_golite062009
  • DNA binding
    		•  3.30822066787723 bayes_pls_golite062009
  • transcription factor activity
    		•  2.60537570879007 bayes_pls_golite062009
  • hydrolase activity
    		•  2.30467124306022 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.32971938164691 bayes_pls_golite062009
  • transcription activator activity
    		•  1.08566311616647 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.95491822926452 bayes_pls_golite062009
  • protein binding
    		•  0.653872239015235 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.42135864069093 bayes_pls_golite062009
  • structural molecule activity
    		•  0.272316540117209 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.136726704233672 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.118016217031359 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0912115683429473 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle