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Protein Overview: NDK2_ARATH

General Information:
Name(s) found: NDK2_ARATH [Swiss-Prot]
Description(s) found:
Found 21 descriptions.
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  • Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    nucleus [IDA]
    chloroplast [IDA]
    cytoplasm [IDA]
    chloroplast envelope [IDA]
    thylakoid [IDA]
    Biological Process: red, far-red light phototransduction [IMP]
    response to UV [TAS]
    response to hydrogen peroxide [IEP][IMP]
    auxin mediated signaling pathway [IMP]
    Molecular Function: ATP binding [ISS]
    protein binding [IPI]
    nucleoside diphosphate kinase activity [IDA][ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR  60
   61 LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV GEIISRFEKK GFKLIGLKMF 120
  121 QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP 180
  181 GTIRGDLAVQ TGRNIVHGSD SPENGKREIG LWFKEGELCK WDSALATWLR E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..231] PSI-BLAST 64.69897 crystal structure of nucleoside diphosphate kinase 2 from Arabidopsis

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleobase, nucleoside, nucleotide kinase activity
    		•  9.54806938681864 bayes_pls_golite062009
  • phosphotransferase activity, phosphate group as acceptor
    		•  8.99343206813136 bayes_pls_golite062009
  • nucleoside diphosphate kinase activity
    		•  6.31603417387406 bayes_pls_golite062009
  • kinase activity
    		•  5.17632668597727 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  4.81683227683584 bayes_pls_golite062009
  • tubulin binding
    		•  3.91203457981165 bayes_pls_golite062009
  • transferase activity
    		•  3.88584335567051 bayes_pls_golite062009
  • microtubule binding
    		•  3.30486676956703 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.90440302787538 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.33936391947568 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.14345344254908 bayes_pls_golite062009
  • DNA binding
    		•  1.9929237581784 bayes_pls_golite062009
  • binding
    		•  1.77213317402453 bayes_pls_golite062009
  • catalytic activity
    		•  1.54275558650196 bayes_pls_golite062009
  • protein binding
    		•  1.44203715518441 bayes_pls_golite062009
  • transcription factor activity
    		•  1.25823661686679 bayes_pls_golite062009
  • gamma-tubulin binding
    		•  0.715852577944201 bayes_pls_golite062009
  • ATP binding
    		•  0.642661537717629 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.611368256550302 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.594323192037838 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.548739243763112 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.548674300422543 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.538092730319695 bayes_pls_golite062009
  • nucleotide binding
    		•  0.532504383462049 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle