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Protein Overview: CH10C_ARATH

General Information:
Name(s) found: CH10C_ARATH [Swiss-Prot]
Description(s) found:
Found 25 descriptions.
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  • 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 253 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA][ISS]
    mitochondrion [IDA]
    apoplast [IDA]
    chloroplast envelope [IDA]
    thylakoid [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: response to cold [IEP]
    response to cadmium ion [IEP]
    Molecular Function: calmodulin binding [TAS]
    copper ion binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATQLTASP VTMSARSLAS LDGLRASSVK FSSLKPGTLR QSQFRRLVVK AASVVAPKYT  60
   61 SIKPLGDRVL VKIKEAEEKT LGGILLPSTA QSKPQGGEVV AVGEGRTIGK NKIDITVPTG 120
  121 AQIIYSKYAG TEVEFNDVKH LILKEDDIVG ILETEDIKDL KPLNDRVFIK VAEAEEKTAG 180
  181 GLLLTETTKE KPSIGTVIAV GPGSLDEEGK ITPLPVSTGS TVLYSKYAGN DFKGKDGSNY 240
  241 IALRASDVMA ILS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..154] FFAS03 5.97 Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus
    2 View Details [155..253] PSI-BLAST 32.69897 Crystal structure of the Cpn10 from Thermus thermophilus HB8

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chaperone binding
    		•  3.00866795811505 bayes_pls_golite062009
  • binding
    		•  2.07560225095955 bayes_pls_golite062009
  • unfolded protein binding
    		•  2.06335826875673 bayes_pls_golite062009
  • protein binding
    		•  1.29126619011194 bayes_pls_golite062009
  • catalytic activity
    		•  0.237157551259574 bayes_pls_golite062009
    2
    Term Confidence Notes
  • chaperone binding
    		•  3.52404463833595 bayes_pls_golite062009
  • unfolded protein binding
    		•  2.30823619318536 bayes_pls_golite062009
  • binding
    		•  2.14732485977044 bayes_pls_golite062009
  • protein binding
    		•  1.37872958560856 bayes_pls_golite062009
  • catalytic activity
    		•  0.217171374336363 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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