YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CH10C_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATQLTASP VTMSARSLAS LDGLRASSVK FSSLKPGTLR QSQFRRLVVK AASVVAPKYT  60
   61 SIKPLGDRVL VKIKEAEEKT LGGILLPSTA QSKPQGGEVV AVGEGRTIGK NKIDITVPTG 120
  121 AQIIYSKYAG TEVEFNDVKH LILKEDDIVG ILETEDIKDL KPLNDRVFIK VAEAEEKTAG 180
  181 GLLLTETTKE KPSIGTVIAV GPGSLDEEGK ITPLPVSTGS TVLYSKYAGN DFKGKDGSNY 240
  241 IALRASDVMA ILS

Type	Start	End	Confidence
Signal Peptide	1	19	0.74
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	253	0.99