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View Structure Prediction Details

Protein: CH10C_ARATH
Organism: Arabidopsis thaliana
Length: 253 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CH10C_ARATH.

Description E-value Query
Range
Subject
Range
gi|21780187 - gi|21780187|gb|AAM77651.1|AF522274_1 cp10-like protein [Gossypium hirsutum]
297.0 [0..1] [253..1]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATQLTASP VTMSARSLAS LDGLRASSVK FSSLKPGTLR QSQFRRLVVK AASVVAPKYT  60
   61 SIKPLGDRVL VKIKEAEEKT LGGILLPSTA QSKPQGGEVV AVGEGRTIGK NKIDITVPTG 120
  121 AQIIYSKYAG TEVEFNDVKH LILKEDDIVG ILET

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.97
Match: 1we3O
Description: Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
chaperone binding 3.00866795811505 bayes_pls_golite062009
binding 2.07560225095955 bayes_pls_golite062009
unfolded protein binding 2.06335826875673 bayes_pls_golite062009
protein binding 1.29126619011194 bayes_pls_golite062009
catalytic activity 0.237157551259574 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [155-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDIKDLKPLN DRVFIKVAEA EEKTAGGLLL TETTKEKPSI GTVIAVGPGS LDEEGKITPL  60
   61 PVSTGSTVLY SKYAGNDFKG KDGSNYIALR ASDVMAILS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1wnrA
Description: Crystal structure of the Cpn10 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
chaperone binding 3.52404463833595 bayes_pls_golite062009
unfolded protein binding 2.30823619318536 bayes_pls_golite062009
binding 2.14732485977044 bayes_pls_golite062009
protein binding 1.37872958560856 bayes_pls_golite062009
catalytic activity 0.217171374336363 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle