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Protein Overview: AGO1_ARATH

General Information:
Name(s) found: AGO1_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1048 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasm [IDA][TAS]
    cytosol [IDA]
    Biological Process: virus induced gene silencing [IDA]
    adventitious root development [IMP]
    gene silencing by miRNA [IEP][IGI][IMP]
    response to far red light [IGI]
    embryonic development ending in seed dormancy [IGI]
    posttranscriptional gene silencing [IEP]
    auxin metabolic process [IGI]
    RNA interference [IMP]
    leaf morphogenesis [IMP]
    response to auxin stimulus [IGI]
    Molecular Function: miRNA binding [IPI]
    protein binding [IPI]
    siRNA binding [IPI]
    endoribonuclease activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG  60
   61 GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG RGGGPSSGPP QRQSVPELHQ 120
  121 ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP 180
  181 MRPGKGQSGK RCIVKANHFF AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH 240
  241 LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH 300
  301 HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG 360
  361 FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD ISSRPLSDAD RVKIKKALRG 420
  421 VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC 480
  481 LQVGNSNRPN YLPMEVCKIV EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND 540
  541 YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG 600
  601 TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR 660
  661 YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL GIVSQCCLTK HVFKMSKQYM 720
  721 ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS 780
  781 QDWPEITKYA GLVCAQAHRQ ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR 840
  841 IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR 900
  901 HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS 960
  961 LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET SDSGSMASGS MARGGGMAGR1020
 1021 STRGPNVNAA VRPLPALKEN VKRVMFYC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] PSI-BLAST 32.0 No description for 1y0fB was found.
    2 View Details [204..346] deduced N/A No confident structure predictions are available.
    3 View Details [347..580] PSI-BLAST 45.39794 Solution Structure of the Drosophila Argonaute 1 PAZ Domain
    4 View Details [581..669] deduced N/A No confident structure predictions are available.
    5 View Details [670..836] PSI-BLAST 6.0 The Structure of a Piwi protein from Archaeoglobus fulgidus.
    6 View Details [837..1048] PSI-BLAST 5.522879 No description for 3dlbA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle