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Protein Overview: AGL12_ARATH

General Information:
Name(s) found: AGL12_ARATH [Swiss-Prot]
Description(s) found:
Found 22 descriptions.
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  • Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 211 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: root development [IMP]
    vegetative to reproductive phase transition of meristem [IMP]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK  60
   61 GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD EINVLKQEIE MLQKGISYMF 120
  121 GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE 180
  181 ENNNSILDAN FAVMETNYSY PLTMPSEIFQ F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] PSI-BLAST 18.69897 Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
    2 View Details [84..211] Pfam 10.366532 No description for PF01486.8 was found. Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.47820295830817 bayes_pls_golite062009
  • DNA binding
    		•  4.34885522982729 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.22473647889076 bayes_pls_golite062009
  • binding
    		•  3.73009730829487 bayes_pls_golite062009
  • transcription factor activity
    		•  3.68208249443337 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.65616273505159 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.72567983955215 bayes_pls_golite062009
  • transcription activator activity
    		•  1.38059870614713 bayes_pls_golite062009
  • protein binding
    		•  1.27646601063623 bayes_pls_golite062009
  • DNA bending activity
    		•  0.167327205417291 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle