| Protein: | AGL12_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 211 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGL12_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
209.0 | [0..1] | [211..1] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK 60
61 GTMEGMIDKY MKCTGGGRGS SSA
|
| Detection Method: |  |
| Confidence: | 18.69897 |
| Match: | 1tqeP |
| Description: | Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.47820295830817 | bayes_pls_golite062009 |
| DNA binding | 4.34885522982729 | bayes_pls_golite062009 |
| nucleic acid binding | 4.22473647889076 | bayes_pls_golite062009 |
| binding | 3.73009730829487 | bayes_pls_golite062009 |
| transcription factor activity | 3.68208249443337 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.65616273505159 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.72567983955215 | bayes_pls_golite062009 |
| transcription activator activity | 1.38059870614713 | bayes_pls_golite062009 |
| protein binding | 1.27646601063623 | bayes_pls_golite062009 |
| DNA bending activity | 0.167327205417291 | bayes_pls_golite062009 |
|
Region A: Residues: [84-211] |
1 11 21 31 41 51
| | | | | |
1 TFTAQEQLQP PNLDPKDEIN VLKQEIEMLQ KGISYMFGGG DGAMNLEELL LLEKHLEYWI 60
61 SQIRSAKMDV MLQEIQSLRN KEGVLKNTNK YLLEKIEENN NSILDANFAV METNYSYPLT 120
121 MPSEIFQF
|
| Detection Method: | |
| Confidence: | 10.366532 |
| Match: | PF01486.8 |
| Description: | No description for PF01486.8 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.905 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
