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Protein Overview: SPBC8D2.09c

General Information:
Name(s) found: SPBC8D2.09c [Sanger Pombe]
Description(s) found:
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  • pir||T40754 splicosomal protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|52783379|sp|Q7LL14.1|RU2B_SCHPO RecName: Full=Probable U2 small nuclear ribonucleoprotein B'' [NCBI NR]
  • gi|2950496|emb|CAA17824.1| U2 snRNP-associated protein Msl1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112363|ref|NP_595571.1| U2 snRNP-associated protein Msl1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • U2 snRNP-associated protein Msl1 [Sanger Pombe]
  • Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe GN=SPBC8D2.09c PE=2 SV=1 [Swiss-Prot]
  • U2 B'-LIKE SPLICEOSOMAL PROTEIN; SIMILAR TO S. CEREVISIAE MSL1; U2 SNRNA-ASSOCIATED PROTEIN; PUTATIVE ROLE IN PRE-MRNA SPLICING: O13649; [pompepVF.fasta]
  • U2 B'-LIKE SPLICEOSOMAL PROTEIN; SIMILAR TO S. CEREVISIAE MSL1; U2 SNRNA-ASSOCIATED PROTEIN; POSSIBLE ROLE IN PRE-MRNA SPLICING: O13649; [pompepV13]
  • |||U2 b'-like spliceosomal protein [pompepnew.fasta]
  • Probable U2 small nuclear ribonucleoprotein B" [4896.FASTAC]
  • |||U2 b'-like spliceosomal protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • U2 b'-like spliceosomal protein; similar to S. cerevisiae YIR009W; U2 snRNA-associated protein; involved in mRNA splicing (predicted); rrm RNA recognition motif; RNA-binding protein [Schizosaccharomyces pombe]gi|19112363|ref|NP_595571.1| U2 b'-like splic [nrdb_11152004_Chlamydomonas]
  • |||U2 snRNP protein|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • |msl1||U2 snRNP-associated protein Msl1 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC8D2.09c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • U2 snRNP protein [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Probable U2 small nuclear ribonucleoprotein B'' [nr-271106-contam.fasta]
  • |||U2 snRNP-associated protein Msl1 |Schizosaccharomyces pombe|chr 2|||Manual [spombe-190209-contam.fasta]
  • Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 111 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    spliceosomal complex [RCALink to PubMed article]
    U2 snRNP [ISSLink to PubMed article]
    Biological Process: nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: U2 snRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQNTLYVNN LNDKINKNDL RTALYMLFST YGTVVDIVAL KTPKMRGQAH VVFFDPSAAA  60
   61 IAMKALKNFI FFGKEMKIQY AHSKSKIIER IVAENDSRGP LKRLRDEADL E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] PSI-BLAST 22.522879 RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN U1A117, NMR, 43 STRUCTURES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.81920018903278 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • binding
    		•  3.05116833253954 bayes_pls_golite062009
  • U1 snRNA binding
    		•  3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • protein binding
    		•  0.42571879933058 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.71

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle