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Protein Overview: srd-42

General Information:
Name(s) found: srd-42 / CE35594 [WormBase]
Description(s) found:
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  • WBGene00005120 locus:srd-42 status:Partially_confirmed UniProt:Q21715 protein_id:CAA94165.3 [WormBase]
  • gi|71994717|ref|NP_510214.2| Serpentine Receptor, class D (delta) family member (srd-42) [Caenorhabditis elegans] [NCBI NR]
  • gi|34555829|emb|CAA94165.3| C. elegans protein R04D3.7, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep111.fasta]
  • Hypothetical protein R04D3.7 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE35594 WBGene00005120 locus:srd-42 status:Partially_confirmed TR:Q21715 protein_id:CAA94165.3 [wormpep150.fasta]
  • 35594 WBGene00005120 locus:srd-42 status:Partially_confirmed TR:Q21715 protein_id:CAA94165.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • locus:srd-42 status:Partially_confirmed TN:CAA94165 protein_id:CAA94165.3 [wormpep115.fasta.reversed]
  • CE35594 WBGene00005120 locus:srd-42 status:Partially_confirmed UniProt:Q21715_CAEEL protein_id:CAA94165.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE35594 WBGene00005120 locus:srd-42 status:Partially_confirmed UniProt:Q21715_CAEEL protein_id:CAA94165.3| [wormORF-contam.fasta]
  • Serpentine Receptor, class D (delta) family member (srd-42) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE35594 WBGene00005120 locus:srd-42 status:Partially_confirmed UniProt:Q21715 protein_id:CAA94165.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE35594 WBGene00005120 locus:srd-42 status:Partially_confirmed UniProt:Q21715 protein_id:CAA94165.3 7TM GPCR, serpentine receptor class d (Srd) [wormpep246-ecoli-contam.fasta]
  • Serpentine Receptor, class D (Delta) OS=Caenorhabditis elegans GN=srd-42 PE=4 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 320 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: embryonic development [IMP]
    locomotion [IMP]
    nematode larval development [IMP]
    embryonic development ending in birth or egg hatching [IMP]
    determination of adult lifespan [IMP]
    gastrulation with mouth forming first [IMP]
    body morphogenesis [IMP]
    positive regulation of multicellular organism growth [IMP]
    growth [IMP]
    gastrulation [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRAILSVFN PLVYVLSVCF QTTLIYTIIR HSPKNLSTLK IILLINCFSQ SIQSSMAFIT  60
   61 QIRYVSNLVP LQLWSYGPCR HFEAFICYSM MHVLQTSSLI SGWTVFLTTF MKYQAAKHVV 120
  121 LPKKNIWIVI CVIFAIISVS VACEIYLIII QALPQDIRKS YESINKNLEE YSVIGIMNYS 180
  181 FLPSSINGVI VNGLVVVVPI SCLTLRRKIF KLLSGPNKSS DTLYLQNRIF LQGLTFQIFG 240
  241 HILVYVPIYI CTFISFITKT EYTFSQFFIF VLPSLTTVVD PVITMYFVTP YRKKLLCWMR 300
  301 SAQNKVFSAS GSTFAVSIIN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..320] PSI-BLAST 39.69897 Rhodopsin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle