YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srd-42
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRAILSVFN PLVYVLSVCF QTTLIYTIIR HSPKNLSTLK IILLINCFSQ SIQSSMAFIT  60
   61 QIRYVSNLVP LQLWSYGPCR HFEAFICYSM MHVLQTSSLI SGWTVFLTTF MKYQAAKHVV 120
  121 LPKKNIWIVI CVIFAIISVS VACEIYLIII QALPQDIRKS YESINKNLEE YSVIGIMNYS 180
  181 FLPSSINGVI VNGLVVVVPI SCLTLRRKIF KLLSGPNKSS DTLYLQNRIF LQGLTFQIFG 240
  241 HILVYVPIYI CTFISFITKT EYTFSQFFIF VLPSLTTVVD PVITMYFVTP YRKKLLCWMR 300
  301 SAQNKVFSAS GSTFAVSIIN

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.74
Transmembrane Helix	8	29	0.85
Cytoplasmic	30	40	0.73
Transmembrane Helix	41	62	0.78
Non-Cytoplasmic	63	90	0.83
Transmembrane Helix	91	110	0.87
Cytoplasmic	111	125	0.88
Transmembrane Helix	126	148	0.95
Non-Cytoplasmic	149	183	0.92
Transmembrane Helix	184	205	0.90
Cytoplasmic	206	237	0.87
Transmembrane Helix	238	257	0.90
Non-Cytoplasmic	258	266	0.83
Transmembrane Helix	267	289	0.91
Cytoplasmic	290	320	0.86