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Protein Overview: CE35350

General Information:
Name(s) found: CE35350 [WormBase]
Description(s) found:
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  • WBGene00010964 Cytochrome c oxidase subunit 1 status:Confirmed [WormBase]
  • gi|5834891|ref|NP_006961.1|COX1_10021 cytochrome c oxidase subunit I [Caenorhabditis elegans] [NCBI NR]
  • gi|515883|emb|CAA38159.1| unnamed protein product [Caenorhabditis elegans] [NCBI NR]
  • gi|27543094|gb|AAO16308.1| cytochrome oxidase subunit I [Caenorhabditis elegans] [NCBI NR]
  • gi|27543079|gb|AAO16296.1| cytochrome oxidase subunit I [Caenorhabditis elegans] [NCBI NR]
  • gi|27543074|gb|AAO16292.1| cytochrome oxidase subunit I [Caenorhabditis elegans] [NCBI NR]
  • gi|27543044|gb|AAO16268.1| cytochrome oxidase subunit I [Caenorhabditis elegans] [NCBI NR]
  • gi|1169025|sp|P24893.2|COX1_CAEEL RecName: Full=Cytochrome c oxidase subunit 1; AltName: Full=Cytochrome c oxidase polypeptide I [NCBI NR]
  • pir||S26034 cytochrome-c oxidase (EC 1.9.3.1) chain I - Caenorhabditis elegans mitochondrion [NCBI NR]
  • Cytochrome c oxidase subunit 1 OS=Caenorhabditis elegans GN=cox-1 PE=3 SV=2 [Swiss-Prot]
  • [wormpep111.fasta]
  • CE35350 WBGene00010964 cytochrome oxidase subunit I status:Confirmed protein_id:CAA38159.1. [wormpep150.fasta]
  • cytochrome c oxidase subunit I [Caenorhabditis elegans]gi|515883|emb|CAA38159.1| unnamed protein product [Caenorhabditis elegans]gi|27543094|gb|AAO16308.1| cytochrome oxidase subunit I [Caenorhabditis elegans]gi|27543079|gb|AAO16296.1| cytochrome oxida [nrdb_11152004_Chlamydomonas]
  • 35350 WBGene00010964 cytochrome oxidase subunit I status:Predicted [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE35350 WBGene00010964 cytochrome oxidase subunit I status:Predicted [wormpep132.fasta]
  • 35350 WBGene00010964 cytochrome oxidase subunit I status:Confirmed protein_id:CAA38159.1. [wormpep150-phg-orf-ecoli-rand.fasta]
  • cytochrome oxidase subunit I status:Partially_confirmed SW:P24893 protein_id:CAA38159.1 [wormpep115.fasta.reversed]
  • CE35350 WBGene00010964 cytochrome oxidase subunit I status:Confirmed [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE35350 WBGene00010964 cytochrome oxidase subunit I status:Confirmed| [wormORF-contam.fasta]
  • CE35350 WBGene00010964 cytochrome oxidase subunit I status:Confirmed [wormpep160-contam.fasta]
  • Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I) [nr-271106-contam.fasta]
  • unnamed protein product [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • cytochrome c oxidase subunit I [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • cytochrome oxidase subunit I [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE35350 WBGene00010964 locus:ctc-1 status:Confirmed UniProt:P24893 Cytochrome c oxidase subunit 1 [wormpep246-ecoli-contam.fasta]
  • CE35350 WBGene00010964 locus:ctc-1 status:Confirmed UniProt:P24893 protein_id:CAA38159.1 Cytochrome c oxidase subunit 1 [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 525 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: electron transport [IEALink to PubMed article]
    aerobic respiration [IEALink to PubMed article]
    Molecular Function: iron ion binding [IEALink to PubMed article]
    heme binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLYKKYQGG LAVWLESSNH KDIGTLYFIF GLWSGMVGTS FSLLIRLELA KPGFFLSNGQ  60
   61 LYNSVITAHA ILMIFFMVMP TMIGGFGNWL LPLMLGAPDM SFPRLNNLSF WLLPTSMLLI 120
  121 LDACFVDMGC GTSWTVYPPL STMGHPGSSV DLAIFSLHAA GLSSILGGIN FMCTTKNLRS 180
  181 SSISLEHMTL FVWTVFVTVF LLVLSLPVLA GAITMLLTDR NLNTSFFDPS TGGNPLIYQH 240
  241 LFWFFGHPEV YILILPAFGI VSQSTLYLTG KKEVFGALGM VYAILSIGLI GCVVWAHHMY 300
  301 TVGMDLDSRA YFSAATMVIA VPTGVKVFSW LATLFGMKMV FNPLLLWVLG FIFLFTLGGL 360
  361 TGVVLSNSSL DIILHDTYYV VSHFHYVLSL GAVFGIFTGV TLWWSFITGY VLDKLMMSAV 420
  421 FILLFIGVNL TFFPLHFAGL HGFPRKYLDY PDVYSVWNII ASYGSIISTA GLFLFIYVLL 480
  481 ESFFSYRLVI SDYYSNSSPE YCMSNYVFGH SYQSEIYFST TSLKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..525] PSI-BLAST 173.0 Mitochondrial cytochrome c oxidase, subunit I

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • heme-copper terminal oxidase activity
    		•  14.1725811596039 bayes_pls_golite062009
  • cytochrome-c oxidase activity
    		•  13.8542976951523 bayes_pls_golite062009
  • oxidoreductase activity, acting on heme group of donors, oxygen as acceptor
    		•  13.8542976951523 bayes_pls_golite062009
  • oxidoreductase activity, acting on heme group of donors
    		•  13.8542976951523 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  7.37127314407573 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  7.21569868255501 bayes_pls_golite062009
  • oxidoreductase activity
    		•  7.16307962729639 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  6.59819712923927 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  6.32599750294462 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  6.1152058837897 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors
    		•  5.8923420516615 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  5.6803770025358 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  5.45928453313406 bayes_pls_golite062009
  • catalytic activity
    		•  1.95966890211023 bayes_pls_golite062009
  • oxidoreduction-driven active transmembrane transporter activity
    		•  1.51081278400602 bayes_pls_golite062009
  • electron carrier activity
    		•  1.29518639068237 bayes_pls_golite062009
  • binding
    		•  0.89004160546195 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
    		•  0.531607015518545 bayes_pls_golite062009
  • transporter activity
    		•  0.37947088637216 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.36572623683433 bayes_pls_golite062009
  • protein binding
    		•  0.358081002328109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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