YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35350
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.95
Transmembrane Helix	24	45	0.93
Non-Cytoplasmic	46	65	0.88
Transmembrane Helix	66	91	0.89
Cytoplasmic	92	109	0.86
Transmembrane Helix	110	131	0.90
Non-Cytoplasmic	132	151	0.88
Transmembrane Helix	152	174	0.90
Cytoplasmic	175	189	0.93
Transmembrane Helix	190	213	0.91
Non-Cytoplasmic	214	246	0.87
Transmembrane Helix	247	267	0.85
Cytoplasmic	268	277	0.73
Transmembrane Helix	278	299	0.93
Non-Cytoplasmic	300	309	0.92
Transmembrane Helix	310	332	0.88
Cytoplasmic	333	343	0.77
Transmembrane Helix	344	365	0.93
Non-Cytoplasmic	366	383	0.92
Transmembrane Helix	384	407	0.91
Cytoplasmic	408	416	0.83
Transmembrane Helix	417	438	0.91
Non-Cytoplasmic	439	458	0.90
Transmembrane Helix	459	480	0.94
Cytoplasmic	481	525	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLYKKYQGG LAVWLESSNH KDIGTLYFIF GLWSGMVGTS FSLLIRLELA KPGFFLSNGQ  60
   61 LYNSVITAHA ILMIFFMVMP TMIGGFGNWL LPLMLGAPDM SFPRLNNLSF WLLPTSMLLI 120
  121 LDACFVDMGC GTSWTVYPPL STMGHPGSSV DLAIFSLHAA GLSSILGGIN FMCTTKNLRS 180
  181 SSISLEHMTL FVWTVFVTVF LLVLSLPVLA GAITMLLTDR NLNTSFFDPS TGGNPLIYQH 240
  241 LFWFFGHPEV YILILPAFGI VSQSTLYLTG KKEVFGALGM VYAILSIGLI GCVVWAHHMY 300
  301 TVGMDLDSRA YFSAATMVIA VPTGVKVFSW LATLFGMKMV FNPLLLWVLG FIFLFTLGGL 360
  361 TGVVLSNSSL DIILHDTYYV VSHFHYVLSL GAVFGIFTGV TLWWSFITGY VLDKLMMSAV 420
  421 FILLFIGVNL TFFPLHFAGL HGFPRKYLDY PDVYSVWNII ASYGSIISTA GLFLFIYVLL 480
  481 ESFFSYRLVI SDYYSNSSPE YCMSNYVFGH SYQSEIYFST TSLKN