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Protein Overview: paqr-2

General Information:
Name(s) found: paqr-2 / CE35070 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00021313 locus:paqr-2 status:Partially_confirmed UniProt:Q9N536 protein_id:CCD73963.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 581 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: cytolysis [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEDDVESAT PAESQKLLQK SVRNSFDERD MVMVLDNDEL IMENRNSSNL QSPLRSVTDV  60
   61 LREAENIITD GPLQLADTQE NQNVIVDQVD VQFPNSQPSD GQRFEIIVRH SKVVEQPASQ 120
  121 QRDESMYVTR QNRLPTLLEG IEIDNGDVPS TSKAAALPFK KGHRRAWSMP NAKGEKMTVA 180
  181 VIHDNHEEGG NQHRRRIVKY KLHPQRRGHE DGKHLRFVTA GHDAEIHLDH SDDDDELEVE 240
  241 INEEEVIIPS ETGEGPRAVI KRFWEARWKA TNFETLPEWL QDNEYLRTGH RPPLPSFSSC 300
  301 FKSIFALHTE TGNIWTHMYG CVAFFGIGIW FLTRPHDQMQ WVEKLIYSAF FLGAVICLGM 360
  361 SFLFHTVACH SIEMAKLFSK LDYTGISLLI VGSFVPWIYF AFYCRPQPMI IYNGMIIILG 420
  421 IAAMVVSLWD KFAEPKFRPV RAAVFIAMGL SAVVPAFHLL VVDGVHYMVE ESQVHLMIMM 480
  481 GAMYIGGATL YATRVPERCF PGKCDIWFQS HQLFHTFVVL AAFVHYHAIS QMGMHKLMKG 540
  541 SCPDQLKTRY GNELNPSFVG TLLGLDEPLN VRDWTPADVG L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..275] PSI-BLAST 4.0 No description for 2i1jA was found.
    2 View Details [276..581] PSI-BLAST 91.0 Mitochondrial cytochrome c oxidase, subunit I

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • cation transmembrane transporter activity
    		•  4.35216255780959 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  4.28952433007809 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  4.263915637641 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  4.134797778797 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  3.52965693501334 bayes_pls_golite062009
  • catalytic activity
    		•  1.95966890211023 bayes_pls_golite062009
  • heme-copper terminal oxidase activity
    		•  1.27735515053931 bayes_pls_golite062009
  • binding
    		•  1.12832931822264 bayes_pls_golite062009
  • cytochrome-c oxidase activity
    		•  0.803860393147327 bayes_pls_golite062009
  • oxidoreductase activity, acting on heme group of donors
    		•  0.803860393147327 bayes_pls_golite062009
  • oxidoreductase activity, acting on heme group of donors, oxygen as acceptor
    		•  0.803860393147327 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.43239037074547 bayes_pls_golite062009
  • transporter activity
    		•  0.37947088637216 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.36572623683433 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.30813504643539 bayes_pls_golite062009
  • protein binding
    		•  0.235323288960659 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle