YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	paqr-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEDDVESAT PAESQKLLQK SVRNSFDERD MVMVLDNDEL IMENRNSSNL QSPLRSVTDV  60
   61 LREAENIITD GPLQLADTQE NQNVIVDQVD VQFPNSQPSD GQRFEIIVRH SKVVEQPASQ 120
  121 QRDESMYVTR QNRLPTLLEG IEIDNGDVPS TSKAAALPFK KGHRRAWSMP NAKGEKMTVA 180
  181 VIHDNHEEGG NQHRRRIVKY KLHPQRRGHE DGKHLRFVTA GHDAEIHLDH SDDDDELEVE 240
  241 INEEEVIIPS ETGEGPRAVI KRFWEARWKA TNFETLPEWL QDNEYLRTGH RPPLPSFSSC 300
  301 FKSIFALHTE TGNIWTHMYG CVAFFGIGIW FLTRPHDQMQ WVEKLIYSAF FLGAVICLGM 360
  361 SFLFHTVACH SIEMAKLFSK LDYTGISLLI VGSFVPWIYF AFYCRPQPMI IYNGMIIILG 420
  421 IAAMVVSLWD KFAEPKFRPV RAAVFIAMGL SAVVPAFHLL VVDGVHYMVE ESQVHLMIMM 480
  481 GAMYIGGATL YATRVPERCF PGKCDIWFQS HQLFHTFVVL AAFVHYHAIS QMGMHKLMKG 540
  541 SCPDQLKTRY GNELNPSFVG TLLGLDEPLN VRDWTPADVG L

Type	Start	End	Confidence
Cytoplasmic	1	313	0.91
Transmembrane Helix	314	333	0.94
Non-Cytoplasmic	334	344	0.87
Transmembrane Helix	345	369	0.87
Cytoplasmic	370	380	0.85
Transmembrane Helix	381	401	0.92
Non-Cytoplasmic	402	408	0.78
Transmembrane Helix	409	429	0.95
Cytoplasmic	430	439	0.79
Transmembrane Helix	440	462	0.89
Non-Cytoplasmic	463	473	0.82
Transmembrane Helix	474	493	0.92
Cytoplasmic	494	510	0.78
Transmembrane Helix	511	529	0.86
Non-Cytoplasmic	530	581	0.81