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Protein Overview: nhr-107

General Information:
Name(s) found: nhr-107 / CE34731 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00003697 locus:nhr-107 status:Confirmed UniProt:G5EEH2 protein_id:CCD66534.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 357 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    steroid hormone receptor activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNCMVCDAS SAQYHFGAIA CRACAAFFRR YVNSKKLTIL CKCLSKKESQ YPCRLCRMKK  60
   61 CKAVGMEASK VQGPRDVNNP FKIKMIEGSS SPESTLSSIE YGLQPRDSEL IKLIIKNYKN 120
  121 LEMTREAIYN MTPSTTGTMQ VNLYELSLEV KTDSKLMWKL CEDTFPEFNQ LCKMDKRILF 180
  181 NNFYSKWSIL EVTMLATKYN DSKNFYSPSG AMCTSINEFY VNTVRDNSAI SQEDIIRVFE 240
  241 PYWKYHFEQV IDPFLALKLN DMENMALFGI IFWDGSYTNI SDELSELCHS MRKIICRELS 300
  301 AHFNETCTTS SRFFETLDTL NIIEKAERKC QEEIALCGFY NFEVDDDMKN MIMWEKY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] PSI-BLAST 16.0 No description for 2hanB was found.
    2 View Details [107..357] PSI-BLAST 42.69897 LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.18770607371139 bayes_pls_golite062009
  • protein binding
    		•  0.699012253331291 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.07679393058916 bayes_pls_golite062009
  • protein binding
    		•  1.4692467191721 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.38569381220638 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  1.33970394025402 bayes_pls_golite062009
  • receptor activity
    		•  1.27827487658808 bayes_pls_golite062009
  • DNA binding
    		•  1.07558579137079 bayes_pls_golite062009
  • signal transducer activity
    		•  0.875578759851886 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.875578759851886 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.843756208408716 bayes_pls_golite062009
  • transcription factor activity
    		•  0.523911554416 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.14253203697325 bayes_pls_golite062009
  • transcription activator activity
    		•  0.0654022419611198 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle