| Protein: | nhr-107 |
| Organism: | Caenorhabditis elegans |
| Length: | 357 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-107.
| Description | E-value | Query Range |
Subject Range |
|
|
264.0 | [0..2] | [355..206] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MVNCMVCDAS SAQYHFGAIA CRACAAFFRR YVNSKKLTIL CKCLSKKESQ YPCRLCRMKK 60
61 CKAVGMEASK VQGPRDVNNP FKIKMIEGSS SPESTLSSIE YGLQPR
|
| Detection Method: |  |
| Confidence: | 16.0 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| binding | 1.18770607371139 | bayes_pls_golite062009 |
| protein binding | 0.699012253331291 | bayes_pls_golite062009 |
|
Region A: Residues: [107-357] |
1 11 21 31 41 51
| | | | | |
1 DSELIKLIIK NYKNLEMTRE AIYNMTPSTT GTMQVNLYEL SLEVKTDSKL MWKLCEDTFP 60
61 EFNQLCKMDK RILFNNFYSK WSILEVTMLA TKYNDSKNFY SPSGAMCTSI NEFYVNTVRD 120
121 NSAISQEDII RVFEPYWKYH FEQVIDPFLA LKLNDMENMA LFGIIFWDGS YTNISDELSE 180
181 LCHSMRKIIC RELSAHFNET CTTSSRFFET LDTLNIIEKA ERKCQEEIAL CGFYNFEVDD 240
241 DMKNMIMWEK Y
|
| Detection Method: | |
| Confidence: | 42.69897 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07679393058916 | bayes_pls_golite062009 |
| protein binding | 1.4692467191721 | bayes_pls_golite062009 |
| transcription regulator activity | 1.38569381220638 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.33970394025402 | bayes_pls_golite062009 |
| receptor activity | 1.27827487658808 | bayes_pls_golite062009 |
| DNA binding | 1.07558579137079 | bayes_pls_golite062009 |
| signal transducer activity | 0.875578759851886 | bayes_pls_golite062009 |
| molecular transducer activity | 0.875578759851886 | bayes_pls_golite062009 |
| nucleic acid binding | 0.843756208408716 | bayes_pls_golite062009 |
| transcription factor activity | 0.523911554416 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.14253203697325 | bayes_pls_golite062009 |
| transcription activator activity | 0.0654022419611198 | bayes_pls_golite062009 |
